Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., SSU ribosomal protein S1p from Sphingobium sp. HT1-2

 Score =  545 bits (1404), Expect = e-159
 Identities = 269/558 (48%), Positives = 385/558 (68%), Gaps = 9/558 (1%)

Query: 3   ESFAQLFEEFLN-ETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELE 61
           + FA L  + L  E    +G +VKGTV  IEN   L+D GLKSE  +P  +F     + +
Sbjct: 10  DDFAALLNDSLGGEDGGFEGRVVKGTVTGIENDMALIDVGLKSEGRVPLREFAAPGQKAD 69

Query: 62  VQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFT 121
           ++VG +V+V +D VE+  GE  LSR++A+R  AW  LE  + E+A V G+I G+VKGGFT
Sbjct: 70  LKVGDEVEVYVDRVENAHGEAMLSRDRARREAAWDKLEAEFTESARVEGVIFGRVKGGFT 129

Query: 122 VELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVE 181
           V+L+G  AFLPGS VD+RP+RD   L +    F+++K+D++R N+VVSRRA++E   + +
Sbjct: 130 VDLDGAVAFLPGSQVDIRPVRDVTPLMDIPQPFQILKMDRRRGNIVVSRRAILEETRAEQ 189

Query: 182 RDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEI 241
           R  L++TL EG  ++G+VKN+TDYGAFVDLGG+DGLLH+TD+++KR+ HP+E++N+GD +
Sbjct: 190 RSGLIQTLAEGQIIEGVVKNITDYGAFVDLGGIDGLLHVTDLSYKRINHPNEMINIGDTV 249

Query: 242 LVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVE 301
            V++++ +R+  R+SLG+KQL  DPW   A +YP G KLSGRVTN+T+YG FVE+E G+E
Sbjct: 250 RVQIIRINRETQRISLGMKQLENDPWEGAAAKYPVGAKLSGRVTNITEYGAFVELEPGIE 309

Query: 302 GLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQ 361
           GLVHVSEM WT KN+HP K+V+   EVEV+VL++D E+RRISLGLKQ ++NPW SFAE  
Sbjct: 310 GLVHVSEMSWTKKNVHPGKIVSTSQEVEVIVLEVDPEKRRISLGLKQAQSNPWDSFAERH 369

Query: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLA 421
             G  V G++K+ T+FG+FIGL+G +DG+VH+SDI+W + GE+A+   +KG+ + AVVL 
Sbjct: 370 PIGSTVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWGISGEDALALHRKGETVQAVVLD 429

Query: 422 VDAERERISLGIKQMEN-----DPFNAYVSDNKKGALVNGTVTAVDAKGATIEL-EDGVE 475
           +D E+ERISLG+KQ+E          A  +   K A+V  TV  V   G  ++  EDG  
Sbjct: 430 IDVEKERISLGMKQLERGGPAAGGTTAAAAGLNKNAIVTVTVLEVRDGGLEVQAGEDGAT 489

Query: 476 GYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVMATLN 535
           G+I+ S++ RDR E  S    +G K +A  TG DR  +    S+KA   AEE++ +A   
Sbjct: 490 GFIKRSDLGRDRDEQRSERFQIGQKFDAMVTGFDRAKKP-TFSVKAMQIAEEKQAVAQYG 548

Query: 536 KQDE-AAFGNAMADAFKA 552
             D  A+ G+ + +A KA
Sbjct: 549 SSDSGASLGDILGEALKA 566