Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 861 a.a., putative transcriptional accessory protein from Pseudomonas putida KT2440

 Score = 66.6 bits (161), Expect = 4e-15
 Identities = 35/78 (44%), Positives = 53/78 (67%), Gaps = 1/78 (1%)

Query: 184 ELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
           E L+ L+ G  ++G+V N+T++GAFVD+G   DGL+HI+ ++ K VK P E V  GD + 
Sbjct: 728 EDLKDLEPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVK 787

Query: 243 VKVLKFDRDRTRVSLGLK 260
           VKV++ D  R RV L ++
Sbjct: 788 VKVMEVDIPRKRVGLSMR 805



 Score = 52.4 bits (124), Expect = 7e-11
 Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNVGDEVEVMVLDI 335
           G  L G VTN+T++G FV+I    +GLVH+S +  + K +  P + V  GD V+V V+++
Sbjct: 736 GMILEGVVTNVTNFGAFVDIGVHQDGLVHISAL--SEKFVKDPREAVKAGDVVKVKVMEV 793

Query: 336 DEERRRISLGLK 347
           D  R+R+ L ++
Sbjct: 794 DIPRKRVGLSMR 805



 Score = 43.1 bits (100), Expect = 4e-08
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 11/92 (11%)

Query: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVRE----FKKGDEISAVVLAVDA 424
           G + ++T+FG F+ +    DGLVH+S +S     E+ V++     K GD +   V+ VD 
Sbjct: 741 GVVTNVTNFGAFVDIGVHQDGLVHISALS-----EKFVKDPREAVKAGDVVKVKVMEVDI 795

Query: 425 ERERISLGIKQMENDPFNAYVSDNKKGALVNG 456
            R+R+ L ++   +D     V  N+ G   NG
Sbjct: 796 PRKRVGLSMRM--SDTPGEKVEGNRGGNRGNG 825