Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 627 a.a., 30S ribosomal protein S1 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  380 bits (975), Expect = e-109
 Identities = 201/542 (37%), Positives = 325/542 (59%), Gaps = 10/542 (1%)

Query: 16  TQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEVQVGSQVDVALDAV 75
           T  Q+  +V GTVV + +  V+++ G KS+  +   +F++     +++ G QV+V ++  
Sbjct: 39  TTVQEQEVVTGTVVGVTDRDVILNIGFKSDGLVSISEFRDMP---DLKPGDQVEVFIEDQ 95

Query: 76  EDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPGSL 135
           ED  G+  LSR+KAK   AW  +  A E    + G++  + KGG  ++++G+ AFLPGS 
Sbjct: 96  EDPNGQLILSRKKAKIVSAWARIYDALENDNVLEGVVKRRTKGGLIMDIHGVEAFLPGSQ 155

Query: 136 VDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEV 195
           +DV+PIRD      K++E KV+K++   +NVVVS + +IE +   +R  +L  L++G  +
Sbjct: 156 IDVKPIRDFDVFVGKKMEVKVVKINAAFDNVVVSHKVLIEKDLEQQRAAILNNLEKGQVL 215

Query: 196 KGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRV 255
           +G++KN+T++G F+DLGGVDGLLHITD++W R+ HP E++ +  ++ + VL FD D+ R+
Sbjct: 216 EGVIKNMTNFGVFIDLGGVDGLLHITDISWGRINHPEEVLQLDQKVNIVVLDFDEDKKRI 275

Query: 256 SLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKN 315
           SLG+KQL   PW A+      G ++ G++ N+ DYG F+E+  GVEGL+HVSEM W+   
Sbjct: 276 SLGMKQLTPHPWDALPAEIEVGSRVKGKIVNVADYGAFLELMPGVEGLIHVSEMSWSQHL 335

Query: 316 IHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPW--QSFAEAQAKGDKVTGKIKS 373
            +P   +  GDEVE +VL +D + R++SLG+KQ   +PW  +      A G K TG +++
Sbjct: 336 RNPQDFIKQGDEVEAVVLTLDRQERKMSLGIKQLTEDPWTKEDVLTKYAIGTKHTGIVRN 395

Query: 374 ITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERISLGI 433
           +T+FG+F+ LE G+DGLVH+SD+SW    +      K G+ +  VVL +D    R++LG 
Sbjct: 396 LTNFGLFLELEEGVDGLVHVSDLSWTKKIKHPSEFVKVGENLDVVVLELDVPNRRLALGH 455

Query: 434 KQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASL 493
           KQ+E +P++ + S    G++   TV     +GA +EL  G+EG+     +++   ED S 
Sbjct: 456 KQLEENPWDTFESVFNIGSVHKATVLEKSDRGAVLELPYGIEGFSFPKGLTK---EDGSQ 512

Query: 494 ILNVGDKVEAKFTGVDRKNRVINLSIKA-KDEAEEQEVMATLNKQDEAAFGNAMADAFKA 552
           +   G+ ++ + T   +++R I LS  A   E E     A   K+   A     A A K 
Sbjct: 513 V-EAGETLDFRVTEFSKEDRKIILSHTATHTEVEPSPRAAKATKKAAPAGEKKEARAPKV 571

Query: 553 AK 554
            K
Sbjct: 572 QK 573



 Score =  124 bits (311), Expect = 1e-32
 Identities = 109/356 (30%), Positives = 179/356 (50%), Gaps = 33/356 (9%)

Query: 183 DELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEI 241
           D+ L T+QE   V G V  +TD    +++G   DGL+ I++            +  GD++
Sbjct: 35  DDTLTTVQEQEVVTGTVVGVTDRDVILNIGFKSDGLVSISEF------RDMPDLKPGDQV 88

Query: 242 LVKVLKFDRDRTRVSLGLKQLG-EDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGV 300
            V +   +    ++ L  K+      W  I       + L G V   T  G  ++I  GV
Sbjct: 89  EVFIEDQEDPNGQLILSRKKAKIVSAWARIYDALENDNVLEGVVKRRTKGGLIMDI-HGV 147

Query: 301 EGLVHVSEMDWTNKNIHPSK--VVNVGDEVEVMVLDID--------EERRRISLGLKQCK 350
           E  +  S++D     + P +   V VG ++EV V+ I+          +  I   L+Q +
Sbjct: 148 EAFLPGSQID-----VKPIRDFDVFVGKKMEVKVVKINAAFDNVVVSHKVLIEKDLEQQR 202

Query: 351 ANPWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISW-NVPGEEAVREF 409
           A    +      KG  + G IK++T+FG+FI L GG+DGL+H++DISW  +   E V + 
Sbjct: 203 A----AILNNLEKGQVLEGVIKNMTNFGVFIDL-GGVDGLLHITDISWGRINHPEEVLQL 257

Query: 410 KKGDEISAVVLAVDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIE 469
            +  +++ VVL  D +++RISLG+KQ+   P++A  ++ + G+ V G +  V   GA +E
Sbjct: 258 DQ--KVNIVVLDFDEDKKRISLGMKQLTPHPWDALPAEIEVGSRVKGKIVNVADYGAFLE 315

Query: 470 LEDGVEGYIRASEVS-RDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDE 524
           L  GVEG I  SE+S    + +    +  GD+VEA    +DR+ R ++L IK   E
Sbjct: 316 LMPGVEGLIHVSEMSWSQHLRNPQDFIKQGDEVEAVVLTLDRQERKMSLGIKQLTE 371