Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 822 a.a., Transcription accessory protein (S1 RNA-binding domain) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 62.4 bits (150), Expect = 7e-14
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 186 LETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEILVK 244
           +  L+EG  ++G V N+  +GAFVDLG   DGL+H++ ++ K V    EIV  GD + VK
Sbjct: 699 ISDLREGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREIVKTGDIVKVK 758

Query: 245 VLKFDRDRTRVSLGLK 260
           V++ D  R R+ L +K
Sbjct: 759 VMEVDVARKRIGLSMK 774



 Score = 54.3 bits (129), Expect = 2e-11
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 276 EGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSK-VVNVGDEVEVMVLD 334
           EG  L G V+N+  +G FV++    +GLVHVS++  ++K ++ ++ +V  GD V+V V++
Sbjct: 704 EGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQL--SHKFVNDAREIVKTGDIVKVKVME 761

Query: 335 IDEERRRISLGLK 347
           +D  R+RI L +K
Sbjct: 762 VDVARKRIGLSMK 774



 Score = 46.6 bits (109), Expect = 4e-09
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           +SD ++G ++ GTV+ V   GA ++L    +G +  S++S   + DA  I+  GD V+ K
Sbjct: 699 ISDLREGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREIVKTGDIVKVK 758

Query: 505 FTGVDRKNRVINLSIK 520
              VD   + I LS+K
Sbjct: 759 VMEVDVARKRIGLSMK 774



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 363 KGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAV 422
           +G  + G + ++  FG F+ L    DGLVH+S +S      +A    K GD +   V+ V
Sbjct: 704 EGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFV-NDAREIVKTGDIVKVKVMEV 762

Query: 423 DAERERISLGIK 434
           D  R+RI L +K
Sbjct: 763 DVARKRIGLSMK 774