Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., RNA-binding transcriptional accessory protein from Magnetospirillum magneticum AMB-1

 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 184 ELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
           E L  L+ G  ++G+V N+T++GAFVD+G   DGL+HI+ +A + VK P E+V  GD + 
Sbjct: 657 ETLNDLKPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVK 716

Query: 243 VKVLKFDRDRTRVSLGLK 260
           VKVL+ D  R+R++L ++
Sbjct: 717 VKVLEVDIKRSRIALSMR 734



 Score = 53.1 bits (126), Expect = 4e-11
 Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEM-DWTNKNIHPSKVVNVGDEVEVMVLDI 335
           G  L G VTN+T++G FV+I    +GLVH+S + D   K+  P +VV  GD V+V VL++
Sbjct: 665 GMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKD--PHEVVKPGDLVKVKVLEV 722

Query: 336 DEERRRISLGLK 347
           D +R RI+L ++
Sbjct: 723 DIKRSRIALSMR 734



 Score = 40.4 bits (93), Expect = 3e-07
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERER 428
           G + ++T+FG F+ +    DGLVH+S ++     ++     K GD +   VL VD +R R
Sbjct: 670 GVVTNVTNFGAFVDIGVHQDGLVHISVLADRFV-KDPHEVVKPGDLVKVKVLEVDIKRSR 728

Query: 429 ISLGIKQMENDPFNAYVSD 447
           I+L ++ M+  P  A   D
Sbjct: 729 IALSMR-MDAQPAPARKDD 746