Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., Transcription accessory protein (S1 RNA-binding domain) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 65.5 bits (158), Expect = 7e-15
 Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 2/91 (2%)

Query: 184 ELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
           E +  L  G  ++G V N+T++GAFVD+G   DGL+HI+ ++ K V  P  +V  GD + 
Sbjct: 643 ETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVK 702

Query: 243 VKVLKFDRDRTRVSLGLKQLGEDPWVAIAKR 273
           VKVL+ D  R R++L ++ L E P    A+R
Sbjct: 703 VKVLEVDLQRKRIALTMR-LDEQPGETAARR 732



 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDID 336
           G  L G VTN+T++G FV+I    +GLVH+S +  T     P  VV  GD V+V VL++D
Sbjct: 651 GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLS-TKFVDDPHTVVKAGDIVKVKVLEVD 709

Query: 337 EERRRISLGLKQCKANPWQSFAEAQAKGDKVTG 369
            +R+RI+L ++     P ++ A      D+  G
Sbjct: 710 LQRKRIALTMR-LDEQPGETAARRGGGADRAQG 741



 Score = 43.1 bits (100), Expect = 4e-08
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERER 428
           G + ++T+FG F+ +    DGLVH+S +S     ++     K GD +   VL VD +R+R
Sbjct: 656 GAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFV-DDPHTVVKAGDIVKVKVLEVDLQRKR 714

Query: 429 ISLGIK 434
           I+L ++
Sbjct: 715 IALTMR 720



 Score = 39.3 bits (90), Expect = 6e-07
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           ++D   G ++ G VT V   GA +++    +G +  S +S   ++D   ++  GD V+ K
Sbjct: 645 MNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVK 704

Query: 505 FTGVDRKNRVINLSIKAKDEAEEQEVMATLNKQDEAAFGNAMADAFKAAK 554
              VD + + I L+++   + +  E  A      + A GN  A   KAAK
Sbjct: 705 VLEVDLQRKRIALTMRL--DEQPGETAARRGGGADRAQGNRPAS--KAAK 750