Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., SSU ribosomal protein S1p from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  935 bits (2416), Expect = 0.0
 Identities = 472/557 (84%), Positives = 513/557 (92%), Gaps = 1/557 (0%)

Query: 1   MTESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGEL 60
           MTESFAQLFEE L E + + G+IV+G VVAI+   VLVDAGLKSESAIPAEQFKNA GEL
Sbjct: 1   MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQFKNAQGEL 60

Query: 61  EVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGF 120
           E+QVG +VDVALDAVEDGFGET LSREKAKRHEAWI LEKAYE+A TV G+INGKVKGGF
Sbjct: 61  EIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGF 120

Query: 121 TVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSV 180
           TVELNGIRAFLPGSLVDVRP+RDT HLE KELEFKVIKLDQKRNNVVVSRRAVIESE+S 
Sbjct: 121 TVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSA 180

Query: 181 ERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE 240
           ERD+LLE LQEG EVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE
Sbjct: 181 ERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE 240

Query: 241 ILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGV 300
           I VKVLKFDR+RTRVSLGLKQLGEDPWVAIAKRYPEG KL+GRVTNLTDYGCFVEIEEGV
Sbjct: 241 INVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGV 300

Query: 301 EGLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEA 360
           EGLVHVSEMDWTNKNIHPSKVVNVGD VEVMVLDIDEERRRISLGLKQCK+NPWQ FAE 
Sbjct: 301 EGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNPWQQFAET 360

Query: 361 QAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVL 420
             KGD+V GKIKSITDFGIFIGL+GGIDGLVHLSDISWNV GEEAVRE+KKGDEI+AVVL
Sbjct: 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVL 420

Query: 421 AVDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRA 480
            VDAERERISLG+KQ+  DPFN +V+ NKKGA+V G VTAVDAKGAT+EL DGVEGY+RA
Sbjct: 421 QVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRA 480

Query: 481 SEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVMATLNKQDEA 540
           SE SRDR+EDA+L+L+VGD VEAKFTGVDRKNR I+LS++AKDEA+E++ +AT+NKQ++A
Sbjct: 481 SEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQEDA 540

Query: 541 AF-GNAMADAFKAAKGE 556
            F  NAMA+AFKAAKGE
Sbjct: 541 NFSNNAMAEAFKAAKGE 557