Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., Transcriptional accessory protein from Enterobacter asburiae PDN3

 Score = 66.2 bits (160), Expect = 4e-15
 Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 2/95 (2%)

Query: 184 ELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
           E +  L  G  ++G V N+T++GAFVD+G   DGL+HI+ +A K V+ P  +V  GD + 
Sbjct: 643 ETMNDLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVK 702

Query: 243 VKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEG 277
           VKVL+ D  R R++L ++ L E P    A+R   G
Sbjct: 703 VKVLEVDLQRKRIALTMR-LDEQPGDTNARRGGNG 736



 Score = 56.6 bits (135), Expect = 3e-12
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKVVNVGDEVEVMVLDI 335
           G  L G VTN+T++G FV+I    +GLVH+S +   +K +  P  VV  GD V+V VL++
Sbjct: 651 GMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL--ADKFVEDPHTVVKAGDIVKVKVLEV 708

Query: 336 DEERRRISLGLK 347
           D +R+RI+L ++
Sbjct: 709 DLQRKRIALTMR 720



 Score = 42.7 bits (99), Expect = 5e-08
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVD 423
           G  + G + ++T+FG F+ +    DGLVH+S ++     E+     K GD +   VL VD
Sbjct: 651 GMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFV-EDPHTVVKAGDIVKVKVLEVD 709

Query: 424 AERERISLGIK 434
            +R+RI+L ++
Sbjct: 710 LQRKRIALTMR 720



 Score = 40.0 bits (92), Expect = 3e-07
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 18/130 (13%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           ++D   G ++ G VT V   GA +++    +G +  S ++   +ED   ++  GD V+ K
Sbjct: 645 MNDLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVK 704

Query: 505 FTGVDRKNRVINLSIKAKDE--------------AEEQEVMATLNK---QDEAAFGN-AM 546
              VD + + I L+++  ++               E+Q   A   K   +D    GN AM
Sbjct: 705 VLEVDLQRKRIALTMRLDEQPGDTNARRGGNGGGREQQRPAAKAAKPRGRDAQPAGNSAM 764

Query: 547 ADAFKAAKGE 556
            DA  AA G+
Sbjct: 765 MDALAAAMGK 774