Pairwise Alignments

Query, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

Subject, 781 a.a., RNA-binding transcriptional accessory protein from Dickeya dadantii 3937

 Score = 65.5 bits (158), Expect = 8e-15
 Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 2/110 (1%)

Query: 171 RAVIESESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVK 229
           R   ++ S  +  E L  L  G  ++G V N+T++GAFVD+G   DGL+HI+ ++ + V+
Sbjct: 629 RPEFKTASFADGVETLNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVE 688

Query: 230 HPSEIVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHK 279
            P ++V  GD + VKVL+ D  R R++L ++ L E P    ++R   G +
Sbjct: 689 DPHQVVKAGDIVKVKVLEVDLQRKRIALTMR-LDEQPGEGNSRRGSGGRE 737



 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 30/72 (41%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKVVNVGDEVEVMVLDI 335
           G  L G VTN+T++G FV+I    +GLVH+S +  +++ +  P +VV  GD V+V VL++
Sbjct: 650 GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL--SDRFVEDPHQVVKAGDIVKVKVLEV 707

Query: 336 DEERRRISLGLK 347
           D +R+RI+L ++
Sbjct: 708 DLQRKRIALTMR 719



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 369 GKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERER 428
           G + ++T+FG F+ +    DGLVH+S +S     E+  +  K GD +   VL VD +R+R
Sbjct: 655 GAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFV-EDPHQVVKAGDIVKVKVLEVDLQRKR 713

Query: 429 ISLGIK 434
           I+L ++
Sbjct: 714 IALTMR 719



 Score = 38.9 bits (89), Expect = 8e-07
 Identities = 22/83 (26%), Positives = 43/83 (51%)

Query: 445 VSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAK 504
           ++D   G ++ G VT V   GA +++    +G +  S +S   +ED   ++  GD V+ K
Sbjct: 644 LNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVK 703

Query: 505 FTGVDRKNRVINLSIKAKDEAEE 527
              VD + + I L+++  ++  E
Sbjct: 704 VLEVDLQRKRIALTMRLDEQPGE 726