Pairwise Alignments

Query, 389 a.a., lipopolysaccharide assembly protein LapB from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., Lipopolysaccharide assembly protein LapB from Variovorax sp. SCN45

 Score =  175 bits (443), Expect = 2e-48
 Identities = 117/385 (30%), Positives = 179/385 (46%), Gaps = 12/385 (3%)

Query: 5   LFLLLPIAAAYGWYMGHRSAQQDKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFIELLQV 64
           L + LPIA   GW       +Q K  ++ Q  + Y  GLN LL++Q D+A+D FIE +Q 
Sbjct: 8   LLIGLPIAFVLGWLASRFDIRQLKL-ENRQAPKAYFRGLNFLLNEQQDQAIDAFIEAVQN 66

Query: 65  DNETIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTIDQKNLALQQLAKDYMVSGFLD 124
           D +T + H ALGNLFR RGE  RA+R+H++L+ R  L+   +  A   LA+D++ +G LD
Sbjct: 67  DPDTQELHFALGNLFRRRGEYQRAVRVHEHLLGRGDLSRTDRERAQHALAQDFLRAGLLD 126

Query: 125 RAEKIFEQLIDEPEHRESALQQLTAIYQQTREWHKAIECATALVKLGRKRMKVNIAHFYC 184
           RAE   ++L +   +   A   L AIY+++REW +A + A  L +  +       AH  C
Sbjct: 127 RAEAALQKL-EGTRYENEARLSLLAIYERSREWAQAADVAQKLDESDQASYATRRAHHLC 185

Query: 185 ELAMLEKADSNDNKAIQLFKKALQEDPKCVRATISLGKLYLQNEDYQKTIDHLEMVLEQD 244
           E A    A S+   A +L  +A++  P+  R  I    L L+  +     D L  + E  
Sbjct: 186 EQATERVAASDLPGATKLLAQAVELAPQAPRPAIDTANLQLRKSEPAAAFDTLVALSETA 245

Query: 245 IDFIGEVLNTLAECYHHLGREQDLITFLRRCIANKAGVSAELMLAQLVAQHEGIAAAQEI 304
              +     TL +      RE + +  L+R       +     L  L       A   + 
Sbjct: 246 PLALPLYAATLQQAAVGAHREGEALALLQRRYVESPSIDVLEALIALGGTPSATAEEPQP 305

Query: 305 LTR-----QLVKNPTMKGFYRLIDYHIAEAEEGRAKASLSTLQRLVGEQLKVKPHYRCRK 359
             R      L + P++    R +     E E+   +     +QR + +  +    YRC  
Sbjct: 306 TPRDGYIAHLAQQPSLVAASRWLAGERFEHEQFHPQ-----VQRALDQATRPLMRYRCAA 360

Query: 360 CGFSTHSLYWHCPSCKNWGSIKPIR 384
           CGF  H  +WHCP C+ W S  P R
Sbjct: 361 CGFEAHQYFWHCPGCQAWDSYPPRR 385