Pairwise Alignments

Query, 389 a.a., lipopolysaccharide assembly protein LapB from Vibrio cholerae E7946 ATCC 55056

Subject, 392 a.a., lipopolysaccharide assembly protein LapB from Variovorax sp. OAS795

 Score =  180 bits (456), Expect = 7e-50
 Identities = 118/388 (30%), Positives = 187/388 (48%), Gaps = 15/388 (3%)

Query: 5   LFLLLPIAAAYGWYMGHRSAQQDKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFIELLQV 64
           L + LPIA   GW       +Q K  ++ Q  + Y  GLN LL++Q D+A+D FIE +Q 
Sbjct: 8   LLISLPIAFVLGWLASRFDIRQLKL-ENRQAPKAYFRGLNFLLNEQQDQAIDAFIEAVQN 66

Query: 65  DNETIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTIDQKNLALQQLAKDYMVSGFLD 124
           D +T + H ALGNLFR RGE  RA+R+H++L+ R  L+   +  A   LA+D++ +G LD
Sbjct: 67  DPDTQELHFALGNLFRRRGEYQRAVRVHEHLLGRGDLSRSDRERAQHALAQDFLRAGLLD 126

Query: 125 RAEKIFEQLIDEPEHRESALQQLTAIYQQTREWHKAIECATALVKLGRKRMKVNIAHFYC 184
           RAE   ++L +   +   A   L AIY+++REW +A + A  L +  +       AH  C
Sbjct: 127 RAEAALQKL-EGTRYENEARLSLLAIYERSREWTQAADVAQKLDESDQASYSTRRAHHLC 185

Query: 185 ELAMLEKADSNDNKAIQLFKKALQEDPKCVRATISLGKLYLQNEDYQKTIDHLEMVLEQD 244
           E A  + A  +   A +L  +A+   P+  R  I    L L+N D     D L  + +  
Sbjct: 186 EQAAEQVAAGDMAAANRLLSEAVALAPQAPRPAIDSATLQLRNGDAATAFDTLVALSDTA 245

Query: 245 IDFIGEVLNTLAECYHHLGREQDLITFLRRCIANKAGVSA-ELMLAQLVAQHEGIAAAQE 303
              +      L +      RE++ ++ L+R  A    +   E ++A   +    +AAA+ 
Sbjct: 246 PLALPLYAAALQQAAVAAQREREALSLLQRRYAESPSIDVLEALMALGGSPAHAVAAAEG 305

Query: 304 I-------LTRQLVKNPTMKGFYRLIDYHIAEAEEGRAKASLSTLQRLVGEQLKVKPHYR 356
           +           L + P++    R +     E E+   +     +QR + +  +    YR
Sbjct: 306 LPLTPRDGYIAHLAQQPSLVAASRWLAGERFEHEQFHPQ-----VQRALDQATRPLMRYR 360

Query: 357 CRKCGFSTHSLYWHCPSCKNWGSIKPIR 384
           C  CGF  H  +WHCP C+ W S  P R
Sbjct: 361 CAACGFEAHQYFWHCPGCQAWDSYPPRR 388