Pairwise Alignments

Query, 389 a.a., lipopolysaccharide assembly protein LapB from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., Tetratricopeptide repeat. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 54.7 bits (130), Expect = 5e-12
 Identities = 75/330 (22%), Positives = 135/330 (40%), Gaps = 41/330 (12%)

Query: 45  LLLSDQSDKAVDHFIELLQVDNETIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTID 104
           LLL+    +A+    + L +  +  + + +LGN +R+    ++AI  ++N +    L I+
Sbjct: 111 LLLNGSVKEAIQILEDFLPMAEDKAEIYYSLGNFYRAENNTEKAIFHYKNAVK---LKIN 167

Query: 105 QKNLALQQLAKDYMVSGFLDRAEKIFEQLIDEPEHRESALQQLTAIYQQTREWHKAIEC- 163
            ++ AL QLA      G  D   + +++ ID+  +   A   L  +Y +   + +AI   
Sbjct: 168 HED-ALFQLAMITEEEGSFDEILQFYQEFIDQDPYSAEAWYNLGVVYNRLGRYEEAINAY 226

Query: 164 ----------ATALVKLGRKRM------KVNIAHF------------YCEL-AMLEKADS 194
                     A+A   +G   M      K   A+              C L A  EK D 
Sbjct: 227 DYALIIDDSFASAYFNMGNALMNTQQYEKATEAYLNTINSEGANSENCCYLAAAFEKLDQ 286

Query: 195 NDNKAIQLFKKALQEDPKCVRATISLGKLYLQNEDYQKTIDHLEMVLEQDIDFIGEVLNT 254
            D KA   FKK+ + DP+   A   LG   L+ + + + I + +  L+            
Sbjct: 287 MD-KAFTYFKKSAKLDPEYDDAWFGLGMCMLKKDKFFEAIHYFKKALKLS-SVNANYWVG 344

Query: 255 LAECYHHLGREQDLITFLRRCIANKAG-VSAELMLAQLVAQHEGIAAAQEILTRQLVKNP 313
           LA+  +HLG  Q         I  + G +   + L+ +         A ++L   + + P
Sbjct: 345 LADAEYHLGNLQASSEAYEEAINLEPGLMETYVNLSIIYFDQNRFEEAIDVLKEGIDELP 404

Query: 314 -TMKGFYRLIDYHIAEAEEGRAKASLSTLQ 342
              + +YRL+ Y I   + G+ K + S L+
Sbjct: 405 EDAELYYRLVVYLI---KTGKYKEAFSYLE 431



 Score = 47.4 bits (111), Expect = 9e-10
 Identities = 39/186 (20%), Positives = 82/186 (44%), Gaps = 9/186 (4%)

Query: 68  TIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTIDQKNLALQQLAKDYMVSGFLDRAE 127
           +I+  L  G       E++  + + +N+   + L+ + + + L  L+   +++G +  A 
Sbjct: 66  SIEIKLMYGQCLIFNDELEEGLEVLENI---NNLSPNNEEIVLA-LSNGLLLNGSVKEAI 121

Query: 128 KIFEQLIDEPEHRESALQQLTAIYQQTREWHKAIECATALVKLGRKRMKVNIAHFYCELA 187
           +I E  +   E +      L   Y+      KAI      VKL     K+N      +LA
Sbjct: 122 QILEDFLPMAEDKAEIYYSLGNFYRAENNTEKAIFHYKNAVKL-----KINHEDALFQLA 176

Query: 188 MLEKADSNDNKAIQLFKKALQEDPKCVRATISLGKLYLQNEDYQKTIDHLEMVLEQDIDF 247
           M+ + + + ++ +Q +++ + +DP    A  +LG +Y +   Y++ I+  +  L  D  F
Sbjct: 177 MITEEEGSFDEILQFYQEFIDQDPYSAEAWYNLGVVYNRLGRYEEAINAYDYALIIDDSF 236

Query: 248 IGEVLN 253
                N
Sbjct: 237 ASAYFN 242