Pairwise Alignments

Query, 389 a.a., lipopolysaccharide assembly protein LapB from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., tetratricopeptide repeat protein from Alteromonas macleodii MIT1002

 Score =  309 bits (791), Expect = 1e-88
 Identities = 165/392 (42%), Positives = 238/392 (60%), Gaps = 6/392 (1%)

Query: 1   MLEILFLLLPIAAAYGWYMGHRSAQQDKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFIE 60
           MLE+LFLLLP+AA YGW MG  S +Q ++KQS  +SR Y  GLN LLSDQ DKAVD  I+
Sbjct: 1   MLELLFLLLPVAAGYGWIMGRNSVRQAQRKQSSILSRHYYKGLNFLLSDQPDKAVDTLIK 60

Query: 61  LLQVDNETIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTIDQKNLALQQLAKDYMVS 120
           ++ V+++T++TH+A+G+ FR RGE+DRAI++HQNL+SR  L   Q+  AL++L  DY  +
Sbjct: 61  MINVNSDTVETHIAMGSFFRHRGEIDRAIKVHQNLVSRDELQPAQRENALRELGHDYTQA 120

Query: 121 GFLDRAEKIFEQLIDEPEHRESALQQLTAIYQQTREWHKAIECATALVKL--GRKRMKVN 178
           GFL+RAE  F QL++  +H   A QQL +IYQ T+EW +AIE A  +V+       +   
Sbjct: 121 GFLERAENAFLQLLNSDKHYLVAQQQLFSIYQTTKEWERAIELAERMVQCHGDNDDLCER 180

Query: 179 IAHFYCELAMLEKADSNDNKAIQLFKKALQEDPKCVRATISLGKLYLQNEDYQKTIDHLE 238
           +AHFYCE A +E  + +   A+ L +KA+  D   VR  + LG + L  + +     +  
Sbjct: 181 LAHFYCEQASVELKNDSQGAALTLLQKAVNADEHAVRPWLMLGDIALDQKRFTDANAYFT 240

Query: 239 MVLEQDIDFIGEVLNTLAECYHHLGREQDLITFLRRCIAN-KAGVSAELMLAQLVAQHEG 297
            V E+DI++  E +  L +         D  +F +   A+ +   ++ L +  ++ +   
Sbjct: 241 QVAERDINWFSEAVPRLEKIAE---ETDDWESFQKNLEAHWQECATSYLAMVDVLMKRGE 297

Query: 298 IAAAQEILTRQLVKNPTMKGFYRLIDYHIAEAEEGRAKASLSTLQRLVGEQLKVKPHYRC 357
            A A E L  QL K PTM+GF  L+  +I +  +     SL  L+ LV +Q+  +P YRC
Sbjct: 298 TAQAAEYLLEQLRKRPTMRGFKTLMGLYIDQLSDKTTADSLRLLKELVEKQMLQRPKYRC 357

Query: 358 RKCGFSTHSLYWHCPSCKNWGSIKPIRGLDGE 389
             CGFS   LYW CPSCK WG +KPI+GLDGE
Sbjct: 358 GSCGFSGRKLYWLCPSCKKWGVVKPIKGLDGE 389