Pairwise Alignments

Query, 324 a.a., HTH-type transcriptional regulator CysB from Vibrio cholerae E7946 ATCC 55056

Subject, 297 a.a., DNA-binding transcriptional regulator OxyR from Vibrio cholerae E7946 ATCC 55056

 Score =  100 bits (249), Expect = 4e-26
 Identities = 73/284 (25%), Positives = 137/284 (48%), Gaps = 8/284 (2%)

Query: 1   MKLQQLKYIVEVVNHNLNVSATAENLYTSQPGISKQVRLLEDELGIQIFERSGKHLTQVT 60
           M ++  +Y+V + +H  +    AE  + SQP +S Q+R LEDE+G  + ERS + +   T
Sbjct: 1   MNIRDFEYLVALADHK-HFRKAAEACFVSQPTLSGQIRKLEDEIGTTLLERSSRRVL-FT 58

Query: 61  PAGEHIVRIATEILSRVESIKAVAAEHTHPEMGTLNISTTHTQARYALPEVIKGFTKRYP 120
            AG  +V  A +ILS V++ K +A + T    G L+I    T   Y LP++I    +R+P
Sbjct: 59  EAGLQLVDQAKKILSEVKTFKDMANQQTGAMTGPLHIGFIPTLGPYLLPKIIPTLKERFP 118

Query: 121 RVSLHMHQGTPTQMSEAIAKGTANFAI--ATEALHLYQDAIMLPCYHWNRSIVVPKDHPL 178
            + L++H+    Q+   + +G  +  +  + E    +++   +  Y+   SI VP DH  
Sbjct: 119 ELELYLHEAQTNQLVRQLEEGKLDCLVLASVEETAPFKE---IELYNEVLSIAVPCDHAW 175

Query: 179 TKKEQVTIEDLAAYPLVTYVFGFTGRSELDSAFNRVGMTPKVVFTATDADVIKTYVRMGI 238
             +++V + +L    ++    G   R +        G      F AT  + ++  V  G 
Sbjct: 176 AARDEVDMLELKGKTVLALGDGHCLRDQALGFCFAAGAKDDERFKATSLETLRNMVAAGA 235

Query: 239 GVGVIASMAVDKKQDTDLVA-IDASHIFSASTTSIGFRRGTFLR 281
           G+ ++  +A+ + +  D V  + A +   +    + +R G+ LR
Sbjct: 236 GITLLPELALPEDKTKDGVCYLRAVNPIPSRRLVLAYRPGSPLR 279