Pairwise Alignments

Query, 324 a.a., HTH-type transcriptional regulator CysB from Vibrio cholerae E7946 ATCC 55056

Subject, 297 a.a., putative DNA-binding transcriptional regulator from Pseudomonas putida KT2440

 Score = 95.5 bits (236), Expect = 1e-24
 Identities = 72/287 (25%), Positives = 128/287 (44%), Gaps = 19/287 (6%)

Query: 2   KLQQLKYIVEVVNHNLNVSATAENLYTSQPGISKQVRLLEDELGIQIFERSGKHLTQVTP 61
           +LQ ++  V++     +    AE L+ SQP +S++++ LE+ LG  + ER+ + ++ +T 
Sbjct: 4   ELQDIRSFVKIAELG-SFHEAAEALHLSQPALSRRIKKLEEGLGTSLLERTTRRVS-LTS 61

Query: 62  AGEHIVRIATEILSRVESIKAVAAEHTHPEMGTLNISTTHTQARYALPEVIKGFTKRYPR 121
            G   +  A  +L   E       E    + G + ++   T A Y LP VI+ + ++YP+
Sbjct: 62  VGRDFLPKARRLLDDFEDSILSIRELAERQTGQVTLACIPTAAFYFLPSVIRDYNEQYPK 121

Query: 122 VSLHMHQGTPTQMSEAIAKGTANFAI--------ATEALHLYQDAIMLPCYHWNRSIVVP 173
           + + +   +     EA+ +G A+F I          E + L Q+  +L C          
Sbjct: 122 IRIRLLDLSANDGLEAVLRGEADFGINMMSGQHPDIEFVSLVQEHFVLAC---------R 172

Query: 174 KDHPLTKKEQVTIEDLAAYPLVTYVFGFTGRSELDSAFNRVGMTPKVVFTATDADVIKTY 233
           +DHPL  +  VT  +LA Y L+        R  LD A + + + PK  +           
Sbjct: 173 RDHPLANRASVTWTELADYRLIGVGRLSGNRMLLDHALSGLNLRPKWFYEVQHLSTSLGM 232

Query: 234 VRMGIGVGVIASMAVDKKQDTDLVAIDASHIFSASTTSIGFRRGTFL 280
           V  G+GV  + S+A+       LV++         T  + +RRG  L
Sbjct: 233 VEAGLGVSAMPSLAMPNADHPTLVSVPLIEPQVTRTLGLVYRRGASL 279