Pairwise Alignments

Query, 324 a.a., HTH-type transcriptional regulator CysB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., Alkanesulfonate utilization operon LysR-family regulator CbI from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  270 bits (691), Expect = 3e-77
 Identities = 129/306 (42%), Positives = 203/306 (66%), Gaps = 1/306 (0%)

Query: 1   MKLQQLKYIVEVVNHNLNVSATAENLYTSQPGISKQVRLLEDELGIQIFERSGKHLTQVT 60
           M L Q +++ E V  NLN++  A+ L+TSQPG+SK +  LEDELGI+IF R GK + +VT
Sbjct: 1   MNLHQFRFVQEAVRRNLNLTEAAKALHTSQPGVSKAIIELEDELGIEIFARHGKRIKRVT 60

Query: 61  PAGEHIVRIATEILSRVESIKAVAAEHTHPEMGTLNISTTHTQARYALPEVIKGFTKRYP 120
             G+ +++    IL  V ++K +  +++  + GTL+I+TTHTQARY LP  +    + YP
Sbjct: 61  EPGQQVLKSIDIILREVNNLKRIGEQYSAQDSGTLSIATTHTQARYVLPGPVAALRQAYP 120

Query: 121 RVSLHMHQGTPTQMSEAIAKGTANFAIATEALHLYQDAIMLPCYHWNRSIVVPKDHPLTK 180
           +V + +HQG+P Q+++ + +  A   +ATE+L  Y + + LPCY W   +V+P DHPL +
Sbjct: 121 KVGISLHQGSPDQVAKMLMEEVAEIGMATESLVNYPELVTLPCYEWQHVLVLPFDHPLLE 180

Query: 181 KEQVTIEDLAAYPLVTYVFGFTGRSELDSAFNRVGMTPKVVFTATDADVIKTYVRMGIGV 240
           +E++T++DLA  PLVTY   FTGR+ +D AF    + P +V  A D+DVIKTYV++G+GV
Sbjct: 181 RERITLDDLAQVPLVTYHPSFTGRTRIDQAFALRHLQPNIVLEAIDSDVIKTYVKLGMGV 240

Query: 241 GVIASMAVD-KKQDTDLVAIDASHIFSASTTSIGFRRGTFLRSYMFDFMERFAPHLTRPV 299
           G++A MA+  + Q  DLVA  A+ +F  +   + F+RGT+LR ++  F E  +  L+R +
Sbjct: 241 GIVAEMAMQGENQTPDLVARPAAQLFGHNLARVAFKRGTYLRHFVLRFAELLSDRLSRDL 300

Query: 300 VEQAIS 305
           + +A+S
Sbjct: 301 ILRAMS 306