Pairwise Alignments

Query, 324 a.a., HTH-type transcriptional regulator CysB from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., DNA-binding transcriptional regulator OxyR from Erwinia tracheiphila SCR3

 Score =  109 bits (272), Expect = 1e-28
 Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 6/299 (2%)

Query: 1   MKLQQLKYIVEVVNHNLNVSATAENLYTSQPGISKQVRLLEDELGIQIFERSGKHLTQVT 60
           M ++ L+Y+V +  +  +    A+  + SQP +S Q+R LEDELG+ + ER+ + +   T
Sbjct: 1   MNIRDLEYLVSLAEYR-HFRRAADACHVSQPTLSGQIRKLEDELGVMLLERTSRKVL-FT 58

Query: 61  PAGEHIVRIATEILSRVESIKAVAAEHTHPEMGTLNISTTHTQARYALPEVIKGFTKRYP 120
            AG  +V  A  IL  V+ +K +A++      G L+I    T   Y LP+++    K +P
Sbjct: 59  QAGLLLVDQARTILREVKVLKEMASQQGEVMSGPLHIGLIPTVGPYLLPQIVPMLHKTFP 118

Query: 121 RVSLHMHQGTPTQMSEAIAKGTANFAIATEALHLYQDA-IMLPCYHWNRSIVVPKDHPLT 179
           R+ +++H+    Q+   +  G  + AI   AL    +A I +P +     + + +DHP  
Sbjct: 119 RLEMYLHEAQTLQLLAQLDSGKLDCAIL--ALVKESEAFIEVPLFDEPMRLAIYQDHPWH 176

Query: 180 KKEQVTIEDLAAYPLVTYVFGFTGRSELDSAFNRVGMTPKVVFTATDADVIKTYVRMGIG 239
           K+++V + DLA   L+    G   R +      + G      F AT  + ++  V  G G
Sbjct: 177 KRDRVPMSDLAGEKLLMLEDGHCLRDQTMGFCFQAGADEDTHFRATSLETLRNMVAAGSG 236

Query: 240 VGVIASMAVDKKQDTDLVA-IDASHIFSASTTSIGFRRGTFLRSYMFDFMERFAPHLTR 297
           + ++ ++AV K++  D V  +         T ++ +R G+ LRS      E    H+ +
Sbjct: 237 ITLLPALAVPKERLRDGVCYLPCYKPEPQRTIALVYRPGSPLRSRYEQLTETIREHMKK 295