Pairwise Alignments

Query, 324 a.a., HTH-type transcriptional regulator CysB from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., DNA-binding transcriptional regulator OxyR from Escherichia coli ECRC101

 Score =  102 bits (254), Expect = 1e-26
 Identities = 75/284 (26%), Positives = 136/284 (47%), Gaps = 6/284 (2%)

Query: 1   MKLQQLKYIVEVVNHNLNVSATAENLYTSQPGISKQVRLLEDELGIQIFERSGKHLTQVT 60
           M ++ L+Y+V +  H  +    A++ + SQP +S Q+R LEDELG+ + ER+ + +   T
Sbjct: 1   MNIRDLEYLVALAEHR-HFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVL-FT 58

Query: 61  PAGEHIVRIATEILSRVESIKAVAAEHTHPEMGTLNISTTHTQARYALPEVIKGFTKRYP 120
            AG  +V  A  +L  V+ +K +A++      G L+I    T   Y LP +I    + +P
Sbjct: 59  QAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPHIIPMLHQTFP 118

Query: 121 RVSLHMHQGTPTQMSEAIAKGTANFAIATEALHLYQDA-IMLPCYHWNRSIVVPKDHPLT 179
           ++ +++H+    Q+   +  G  +  I   AL    +A I +P +     + + +DHP  
Sbjct: 119 KLEMYLHEAQTHQLLAQLDSGKLDCVIL--ALVKESEAFIEVPLFDEPMLLAIYEDHPWA 176

Query: 180 KKEQVTIEDLAAYPLVTYVFGFTGRSELDSAFNRVGMTPKVVFTATDADVIKTYVRMGIG 239
            +E V + DLA   L+    G   R +        G      F AT  + ++  V  G G
Sbjct: 177 NRECVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSG 236

Query: 240 VGVIASMAVDKKQDTD-LVAIDASHIFSASTTSIGFRRGTFLRS 282
           + ++ ++AV  ++  D +V +         T  + +R G+ LRS
Sbjct: 237 ITLLPALAVPPERKRDGVVYLPCIKPEPRRTIGLVYRPGSPLRS 280