Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  216 bits (551), Expect = 2e-60
 Identities = 143/473 (30%), Positives = 238/473 (50%), Gaps = 30/473 (6%)

Query: 230 AYRGLTTQMPQLKERFDEPVAKFTQDIGQKGGVLDQHNEYLQARAAL--YNNIANLANEV 287
           +YR LT + P+++++  E      Q I    G+ ++  E  + RAA   Y  +    +++
Sbjct: 69  SYRLLTNREPEVQQKTLEAFEVRNQQIRTAQGIYEKLIESSEERAAYDDYVRLLGQYHQI 128

Query: 288 DKAMTILGAFNQ-----------------------TATDDLNQSLA-----EAGSVYQQG 319
           ++ M  L   NQ                       T   D+N  +A     +A   Y   
Sbjct: 129 EERMKSLSRANQVEELRSLLNNELLSNSEQVNAVLTRLLDINNKMALATNKDAEDQYNMA 188

Query: 320 AIKAVVIGIAVVLLATAIGYHIAHSVREPVTRILKTLESLTQGNMTQRIEIRYNNEFSRL 379
               V + +   LL     + +  S+  P+ + L+  E + +GN+T+ I++  ++E  RL
Sbjct: 189 FNMVVSLLVIATLLTLLFAWLLTRSITLPIAQALEAAEEVAEGNLTRPIKVDGSDEAGRL 248

Query: 380 SRHINSLADNLHDILVKLNSASDDLTATASTNQTTSLSAQNKLNSQREQTSSVAAAMTEM 439
              +  + D L D L ++  ++  L + A      +  +   L  Q  +    A A+ EM
Sbjct: 249 LAAMAKMQDKLRDTLQRIAGSATQLASAAEELNAVTDESARGLTQQNNEIEQAATAVNEM 308

Query: 440 AHSVQEVANSAQNSLAMVQQVETASESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMS 499
             +V+EVA +A ++    +   T++  GR ++   +S I ++   +  +   +GDL   S
Sbjct: 309 TSAVEEVARNAVSTSEASRNATTSAGDGRDLVQETVSAIERMSGDVQATATLIGDLANES 368

Query: 500 SQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEIE 559
             IG +LDVIR +A+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT QSTSEIE
Sbjct: 369 RDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIE 428

Query: 560 SMISNLQSSSSLASKVIESCMQDMELSVEQASHANSAMEEIQALIIEISHMSTHISQAAG 619
            MI ++Q+ +  A   + +  +  E ++  A  A  +++ I   I+EI+  +  I+ AA 
Sbjct: 429 RMIGSIQAGTEHAVDSMRNSTERAESTLNIAKGAGMSLDTINTAIVEINERNLVIASAAE 488

Query: 620 EQNETTTSIARSIEDINHISDESYQAMSQIAQTSANLTALANQQSELVHRFKL 672
           EQ +    + R++ +I  +S +S    SQ +  S+ L+ LA   + +V RF+L
Sbjct: 489 EQAQVAREVDRNLVNIRDLSVQSATGASQTSAASSELSRLAVDLNGMVGRFRL 541