Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  195 bits (495), Expect = 5e-54
 Identities = 126/353 (35%), Positives = 193/353 (54%), Gaps = 1/353 (0%)

Query: 319 GAIKAVVIGIAV-VLLATAIGYHIAHSVREPVTRILKTLESLTQGNMTQRIEIRYNNEFS 377
           G   +  + IAV V +A  +G   +   +    R+L  +E  T   +  ++        +
Sbjct: 167 GMFLSAPVAIAVAVAVAVPVGVLCSRWRQGSTLRLLHGVEPSTSDALIAQMYSDARGPQA 226

Query: 378 RLSRHINSLADNLHDILVKLNSASDDLTATASTNQTTSLSAQNKLNSQREQTSSVAAAMT 437
           RL     S    L   L +L  +++ L+A A  +   + ++   L+ QR +T  V+AA+ 
Sbjct: 227 RLETAFLSQNARLKTCLTRLQDSAEQLSALAGQSDQLASASSKGLDRQRVETEQVSAAVN 286

Query: 438 EMAHSVQEVANSAQNSLAMVQQVETASESGRQIMSTNISTIRQLETRLIESVEAVGDLRK 497
           +MA + QEVA+  Q +    QQ    +  GR++       I +L   + E+   V  L K
Sbjct: 287 QMAATTQEVASHVQRTADATQQANVLTGRGREVARDTREAIERLSAVVSETGVTVAQLAK 346

Query: 498 MSSQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSE 557
            S++IGS++DVI+ IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR LAQRT+QST++
Sbjct: 347 DSNEIGSVVDVIKGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAQRTSQSTTQ 406

Query: 558 IESMISNLQSSSSLASKVIESCMQDMELSVEQASHANSAMEEIQALIIEISHMSTHISQA 617
           I  +I+ LQ+SS+ A + +E+  +  +  V     A+ A+  I   +  I+ M+T I+ A
Sbjct: 407 IHGLITQLQASSNNAVQSMENGQRQAQEGVAWVLEADQALVGISEAVSHITDMTTQIAAA 466

Query: 618 AGEQNETTTSIARSIEDINHISDESYQAMSQIAQTSANLTALANQQSELVHRF 670
             EQ+     I+R+I  I  ++D++     Q    S  LT  A+ Q  LV RF
Sbjct: 467 TEEQSAVAEEISRNITTIAELADQTSLQAHQSTDLSKELTNTASTQYALVERF 519