Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  202 bits (513), Expect = 4e-56
 Identities = 139/479 (29%), Positives = 240/479 (50%), Gaps = 20/479 (4%)

Query: 205 LASSDVAFVEKAVNQNKKAVTHLN---YAYRGLTTQMPQLKERFDEPVAKFTQDIGQKGG 261
           L   D A + + + +N +    +N    AY G T    + ++ F   +  +         
Sbjct: 73  LPMKDEAQIRQTIERNNRVQAEINDSLVAY-GKTVWPGEEEQTFKRLMGNWNAYTA---- 127

Query: 262 VLDQHNEYLQARAA------LYNNIANLANEVDKAMTILGAFNQTATDDLNQSLAEAGSV 315
           V DQ N+ L  + A      L N+++           ++G  +Q    +  Q L+   ++
Sbjct: 128 VTDQFNQTLLTQGADDAYPILANSLSTFEALESDFTLLIGILHQAMDSNKVQILSSVKTL 187

Query: 316 YQQGAIKAVVIGIAVVLLATAIGYHIAHSVREPVTRILKTLESLTQGNMTQRIEIRY--N 373
                  +V   IA++ +   + + +   +  P+  ++K   ++ +G+++Q ++     N
Sbjct: 188 NST----SVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIAKGDLSQTMDRSSIGN 243

Query: 374 NEFSRLSRHINSLADNLHDILVKLNSASDDLTATASTNQTTSLSAQNKLNSQREQTSSVA 433
           +E   L+     +  NL  ++ ++ SA   L++        S  + + +  Q+ Q + VA
Sbjct: 244 DELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQVA 303

Query: 434 AAMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQIMSTNISTIRQLETRLIESVEAVG 493
            AM +M  +V +VA + ++S +        S+ G +  ++ + +I+Q+   + E+ + V 
Sbjct: 304 TAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAGQTVS 363

Query: 494 DLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAQRTTQ 553
           +L + SSQI  ++DVIR+IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT  
Sbjct: 364 ELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQD 423

Query: 554 STSEIESMISNLQSSSSLASKVIESCMQDMELSVEQASHANSAMEEIQALIIEISHMSTH 613
           ST EI ++I  LQ  +  A    E     ++  VEQ +H+ S M  I+  I  I+ + T 
Sbjct: 424 STGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGTQ 483

Query: 614 ISQAAGEQNETTTSIARSIEDINHISDESYQAMSQIAQTSANLTALANQQSELVHRFKL 672
           I+ A  EQ+     ++R++E+I+  S E  Q   Q AQ    LT LA    + + RFK+
Sbjct: 484 IASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRRFKI 542



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 54/275 (19%), Positives = 109/275 (39%), Gaps = 22/275 (8%)

Query: 198 EVITSDALASSDVAFVEKAVNQNKKAVTHLNYAYRGLTTQMPQLKERFDEPVAKFTQDIG 257
           E+I++    SS V  + +  NQ+   +    Y    + T M Q+K    + VA+ T+D  
Sbjct: 266 EIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQVATAMAQMKAAVAD-VARNTEDSA 324

Query: 258 QKGGVLDQHNEYLQARAALYNNIANLANEVDKAMTILGAFNQTATDDLNQSLAEAGSVYQ 317
            +  +   H     AR       A++   + +   I+G   QT + +L Q  ++   V  
Sbjct: 325 SQ-AMAANHKSQEGAR-----ENASMVRSIQQVADIIGEAGQTVS-ELEQQSSQINVVVD 377

Query: 318 QGAIKAVVIGIAVVLLATAI-GYHIAHSVR--EPVTRILKTLESLTQGNMTQRIEIRYNN 374
              I+++     ++ L  AI       S R    V   ++TL   TQ +           
Sbjct: 378 --VIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQDS---------TG 426

Query: 375 EFSRLSRHINSLADNLHDILVKLNSASDDLTATASTNQTTSLSAQNKLNSQREQTSSVAA 434
           E + +   +  +A    D   +  S+ D      + +Q+  +S +  + +  +  + +A+
Sbjct: 427 EITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGTQIAS 486

Query: 435 AMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQ 469
           A +E      E++ + +N     Q+V   S+   Q
Sbjct: 487 ACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQ 521