Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  211 bits (536), Expect = 1e-58
 Identities = 189/678 (27%), Positives = 331/678 (48%), Gaps = 64/678 (9%)

Query: 13  SVIRRMYAGFALIIIMFVVTVAIMLRGMNQI--HSNFESVSTAALPLVSLSNQTSVQLLS 70
           SV  ++  GF L+++   +        M+ +   SN+ S  T+    ++    T +Q + 
Sbjct: 9   SVNMKLALGFGLVLVFTAILALTGWTSMSGLINRSNWMSDITSLNAQLTKLRVTRLQYMV 68

Query: 71  ADKSFKDFLTTQDTSLMDGMRQEFAQSKQRFQSVLAELSQASVNHPELAQPITELKQLET 130
           AD   K   T Q TSL          S + +Q  L    +AS   PE  + + +L  +  
Sbjct: 69  ADGDEKVAETVQ-TSL---------DSFKAYQEKL----RASFKSPENLKMLDQLGIVIA 114

Query: 131 RYFSEADLAMDNYQAMFAAQASVQ----KSTREFQRLHSELSVGMKEFVDDNDSISVKVM 186
            Y    +     Y+A  AA+  +     KS   F++L +E  V   +  D N     +++
Sbjct: 115 DYQKSLNNMRSGYKASTAARDELTTHAVKSLAVFEQLVTE--VRNMDPADANRFEQYRLV 172

Query: 187 AKSYF-IKLKDAEV--ITSDALASSDVAFVEKAVNQNKKAVTHLNYAYRGLTTQMPQLKE 243
             +   ++L   EV   T++A   ++ A V K ++   K +  L   + G  TQ  QL++
Sbjct: 173 TDAKDDLRLARYEVRGYTTNATPETEQAAVSK-LDSAIKDLDALKTTFSG--TQADQLRQ 229

Query: 244 RFDEPVAKFT--QDIGQKGGVLDQHNEYLQARAALYNNIANLANEVDKAMTILGAFNQTA 301
                +A  T  Q+     G + Q  + +  +     +I  ++ ++ K            
Sbjct: 230 LETSLMAYRTTLQNFKAATGTIVQARKEMTTQG---QDIVKISEDMYKLQL--------- 277

Query: 302 TDDLNQSLAEAGSVYQQGAIKAVVIGIAVVLLATAIGYHIAHSVREPVTRILKTLESLTQ 361
            D  +Q  A+A +      + A+++GI   ++ T         +  P+   L  ++ +  
Sbjct: 278 -DRRDQESAQARTTQITCTLLAIILGIIAAVIIT-------RQITRPLRETLAVVDRIAS 329

Query: 362 GNMTQRIEIRYNNEFS-------RLSRHINSLADNLHDILVKLNSASDDLTATASTNQTT 414
           G++TQ + +  ++E         R+   +  L   + D +V++ SA+++L+A   T QT+
Sbjct: 330 GDLTQTLAVTRSDELGVLQQGIQRMGTTLRELIGGIRDSVVQIASAAEELSAV--TEQTS 387

Query: 415 SLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQIMSTN 474
           +      +NSQ+ +T  VA AM EM+ +V EVA +A+ +       +  +  G +++   
Sbjct: 388 A-----GVNSQKVETDQVATAMHEMSATVAEVARNAEQASQAASNADREARDGDKVVGEA 442

Query: 475 ISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQG 534
           I+ I +L   +  SV+A+ +L + S +IG ++DVI+ +AEQTNLLALNAAIEAARAGE G
Sbjct: 443 IAQIERLANEVGRSVDAMTELEQESDKIGKVMDVIKAVAEQTNLLALNAAIEAARAGEAG 502

Query: 535 RGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELSVEQASHAN 594
           RGFAVVADEVR LAQRT QST EIE++++ LQS +   S ++ +  +    SV  +  A 
Sbjct: 503 RGFAVVADEVRGLAQRTQQSTVEIETLVAALQSGTRQVSSIMLNSRELTVSSVTLSRQAG 562

Query: 595 SAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESYQAMSQIAQTSA 654
           +++  I   +  I  M+  I+ AA EQ+     I+RSI ++  +S+++  A  + A +S 
Sbjct: 563 TSLGSITQTVSSIQAMNQQIAAAAEEQSAVAEEISRSIVNVRDVSEQTASASEETAASSV 622

Query: 655 NLTALANQQSELVHRFKL 672
            L  L  Q   +V RF++
Sbjct: 623 ELARLGGQLQTMVSRFRI 640