Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 661 a.a., DEAD/DEAH box helicase from Rhodanobacter sp000427505 FW510-R12

 Score =  126 bits (316), Expect = 6e-33
 Identities = 112/394 (28%), Positives = 175/394 (44%), Gaps = 58/394 (14%)

Query: 600 ATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAV 659
           A FP + TDDQ  A+  +  ++ +  AM  ++  DVG GK+ VA   A  A D G +  +
Sbjct: 250 AGFPGQFTDDQRAAVKGIAQELARPVAMRAVLAADVGTGKSWVAELLAAAAADAGGRTLI 309

Query: 660 LVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVD-------IL 712
           + PT  LA Q  E F+  F ++P  +                  VADG  D       ++
Sbjct: 310 MAPTYPLAVQLAEEFQRIFPDIPCVL------------------VADGHDDSQAAAATVV 351

Query: 713 VGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAM 772
           VGT  +LS E+   +  L++VDE+ R+   Q+E     R    +L ++AT IPRT  +  
Sbjct: 352 VGTSAVLSREL--GEFALVVVDEQQRWSRAQREHYVTTR--THLLEMSATCIPRTQALIR 407

Query: 773 SGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETID---- 828
            G   +  +    AR+  I T + +   + +   +   I  G  +  ++ + E+ +    
Sbjct: 408 FGKVSVFQMRQTHARK-EIHTHLWEGSGAPMFRFIKEAIDAGRPIMVVYPKRESEEDGAK 466

Query: 829 -------KVAA------DLEKLVPE------ARITVAHGQMRERELEKVMNDFYHQRFNL 869
                  KVA        +E   P        R+    G+         ++D    R  +
Sbjct: 467 KKRKGKTKVAGQIDDRHSIETAYPRWDAMYPGRVRAMTGEDDNETKRAGIDDLKEGRAQI 526

Query: 870 LVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITK 929
           L+ TT++E GI VP    I++   D  G+  LHQLRGRV R+      +L  P P  ++ 
Sbjct: 527 LLTTTVVEVGISVPNLYDIVVVHPDRYGITTLHQLRGRVARNGGVGRCHLWCPEP--MSA 584

Query: 930 DAVKRLEAIASLEDLGAGFTLATHDLEIRGAGEL 963
              +RLE + S  D   GF LA  DL IRG G+L
Sbjct: 585 KTRERLEVVVSTTD---GFELAEADLRIRGTGDL 615