Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1196 a.a., transcription-repair coupling factor from Rhodanobacter sp000427505 FW510-R12

 Score = 1153 bits (2983), Expect = 0.0
 Identities = 599/1168 (51%), Positives = 810/1168 (69%), Gaps = 52/1168 (4%)

Query: 25   HGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVAL-FPDWETLPYDNF 83
            HG++ AL +AE A +H    ++   D Q A  L  E++ F+     L FPDWETLPYD F
Sbjct: 24   HGSARALLLAEAARSHEGLLVVVARDTQRAQALEAELKIFAGGLPVLHFPDWETLPYDAF 83

Query: 84   SPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDKL 143
            SPH +I+S RI+ LY+LP + RG+ +VPV+TL+QR +PR  +    L++ +G    L   
Sbjct: 84   SPHPEIVSQRIATLYRLPGVKRGVLVVPVATLMQRIAPRSHITGSGLVLAKGQKLDLATE 143

Query: 144  RLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQR 203
            + +LE S YRHV QV  PG++A RG++LD+FPMG+++P+RI+ FDDE+++IR+FDP+ QR
Sbjct: 144  QRRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGTAEPYRIELFDDEVESIRSFDPETQR 203

Query: 204  SIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYWQ 263
            S   +D++ LLPA EFP T  A + FR   R+RF        +Y  + +G  P GIEY+ 
Sbjct: 204  SQQPVDKVELLPAREFPLTGEAAKLFRGNLRERFPIDVRHCPLYQDMKEGVTPGGIEYYL 263

Query: 264  PLFFEHSETLFDYLPANSQLLVVGE-LEKAIDQFLTDVDYRYDQRNIDPLRPLLPPNELW 322
            PLFFE + TLFDYL A+  L V+GE   +A DQF      RYDQR  D  RP+LPP EL+
Sbjct: 264  PLFFEQTATLFDYL-ADDALFVLGEGAGEAADQFWVQTAERYDQRAHDIERPVLPPAELY 322

Query: 323  LRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAALRQFSEQF 382
            L  ++L        +V++     E     ++   QP P L +  + +EP  +LR F   +
Sbjct: 323  LPPEKLREQLNKRLRVEVVEPGHE---HAIDTGTQPAPELPLNRKGEEPGTSLRHFLASY 379

Query: 383  TGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSL----------------ACQQTE-- 424
             G+++ + +S GRREAL+E L    L+P+   D+                  A ++ E  
Sbjct: 380  PGRVLIAADSAGRREALIETLAAAGLKPEVLEDWRAFLLPLQAEGGWEGVAPAGEEAEAR 439

Query: 425  ---------------------------KYSLVLGSAERGFIYGDNQVALICESDLLGDRV 457
                                       K+++ +   E+GF      +A++ E +L G+RV
Sbjct: 440  ALHPLQGIPFGHNPPLQAGEGAEAEGVKFAITIAPLEQGFALTKPALAVLTERELYGERV 499

Query: 458  -IQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVML 516
              +R RK+ R    + +A+IR+L EL PG P+VH+DHG+GRY GL +++ GGM  E++ +
Sbjct: 500  RSERERKRRRGAARDPEAIIRDLTELTPGAPIVHVDHGVGRYQGLVSMDVGGMDGEFLTI 559

Query: 517  EYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDV 576
            EY    KLYVPV+ L L+SRYSG A E A LH LGG+AW +ARRKAAEKVRDVAAELL +
Sbjct: 560  EYAKGDKLYVPVAQLGLVSRYSGTAPELAPLHSLGGDAWERARRKAAEKVRDVAAELLAI 619

Query: 577  YAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVG 636
            YA+R+ + G    +DR+    F +TFPFEET DQ  AI AVL+D+   +AMDR++CGDVG
Sbjct: 620  YAQRQARGGESLPIDRQLVEEFGSTFPFEETPDQESAIEAVLADLAAPRAMDRVICGDVG 679

Query: 637  FGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKE 696
            FGKTEVA+RAAF     GKQVAVLVPTTLLAQQH+ NF DRFA+ P+RV+VLSRFKSAKE
Sbjct: 680  FGKTEVALRAAFATATAGKQVAVLVPTTLLAQQHYRNFADRFADWPVRVDVLSRFKSAKE 739

Query: 697  QKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDI 756
              + L+ +ADG++D++VGTHKLL  +++F +LGL+IVDEE RFGVRQKE++K +RA+VD+
Sbjct: 740  VNEALKRLADGQIDVIVGTHKLLQPDVKFRNLGLVIVDEEQRFGVRQKEQLKKLRAEVDL 799

Query: 757  LTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQ 816
            LT+TATPIPRTLNMAM+G+RDLS+IATPP  R A++TF+   + + IREA+ RE+ RGGQ
Sbjct: 800  LTMTATPIPRTLNMAMAGLRDLSLIATPPEHRSAVRTFISAWDPATIREALQRELSRGGQ 859

Query: 817  VYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTII 876
            VYFLHN+V++I++   +LE+LVP+ARI +AHGQM ERELE+VM DF+ QRFN+LVCTTII
Sbjct: 860  VYFLHNEVQSIERTVRELEELVPDARIRIAHGQMPERELEQVMADFHRQRFNVLVCTTII 919

Query: 877  ETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLE 936
            ETGID+PTANTII+DRAD  GLAQLHQLRGRVGRSHH+AYAYL+ P  ++IT DA KRLE
Sbjct: 920  ETGIDIPTANTIIIDRADHFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSITADAQKRLE 979

Query: 937  AIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKE 996
            A+ASLE+LGAGFTLATHDLEIRGAGELLG+EQSGQIQ +GF LY E+L++AV ALKSGK 
Sbjct: 980  ALASLEELGAGFTLATHDLEIRGAGELLGDEQSGQIQEIGFGLYTELLDRAVRALKSGKV 1039

Query: 997  PALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFG 1056
            P  D     +TEVE+ L AL+P++Y+PD++ RL++YK+IAS  ++DEL +L+VE+IDRFG
Sbjct: 1040 PDFDLSSEHETEVELHLAALIPDDYLPDVHARLTLYKRIASARNEDELRDLQVEMIDRFG 1099

Query: 1057 KLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLL 1116
             LP+    L A+A LKL A  L +RK++    GG + F    +I+P+ +++L+Q QP++ 
Sbjct: 1100 LLPEPTRQLFAVASLKLMATPLGIRKLDFGANGGRIVFREKPEIDPMTIIQLIQRQPRVY 1159

Query: 1117 AMDGPTKLKFTLPLVERSARIQFVADML 1144
             +DG  KLK  L L   S RI+   D+L
Sbjct: 1160 KLDGQDKLKVILELPGASERIRSAQDVL 1187