Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1169 a.a., Transcription-repair-coupling factor from Xanthobacter sp. DMC5

 Score =  768 bits (1983), Expect = 0.0
 Identities = 451/1108 (40%), Positives = 662/1108 (59%), Gaps = 37/1108 (3%)

Query: 27   ASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHS-EVALFPDWETLPYDNFSP 85
            A LA +IA   NA      +   D Q    L   +  F+   EV  FP W+ LPYD  SP
Sbjct: 32   ADLARSIAAGKNAPWPSLTVVCRDGQRMAALERGLAFFAPELEVIAFPSWDCLPYDRASP 91

Query: 86   HQDIISDRISRLYQLPSLTRG---ITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDK 142
            +  I++ R++ L +L  +  G   + I  V+  +QR   +  +   +L+   G+  +LD 
Sbjct: 92   NASIVARRMAALAKLARIKGGAASVLITTVNATVQRVPAKGLVASQSLVAAPGNAIALDG 151

Query: 143  LRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQ 202
            +    E + +     V   GEYA RG ++DLFP G   P R+DFF D +++IR FDP+ Q
Sbjct: 152  VTEWAEQNGFLRTPTVRDTGEYAVRGGLIDLFPPGLDAPIRLDFFGDTLESIRAFDPETQ 211

Query: 203  RSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYW 262
            R+ +++  + L+P  EF  T   +  FR  +  +F A ++ +++Y  VS+G   AG+E+W
Sbjct: 212  RTTSQLRALELVPMAEFQLTTDTMRRFRMAYIAQFGAAQKGDTLYEAVSEGRRHAGMEHW 271

Query: 263  QPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNI------DPLRPLL 316
             PLF E  +TLFDYL   + LL     E   ++     DY YD R         P+   L
Sbjct: 272  LPLFHERMDTLFDYLEGGTLLLDPLAEEAGGERIAQIADY-YDARRQAQDQHGGPIYNPL 330

Query: 317  PPNELWLRKDELFAHFKTLPQVQLTS-SPIELRAGRMNAQVQPLPV----LAVEHQNKEP 371
            PP+ L+L+  E     K L  ++L   SP  +  G     +    V     A E  +++ 
Sbjct: 331  PPDRLYLQGPEWS---KCLAGMRLARLSPFAVPEGGAGKVIDLGGVQGRSFAAERADQDA 387

Query: 372  L---AALRQFSE-QFTGKIIFSVESEGRREALLELLQRIKLR---PQSQNDFSLACQQTE 424
                AA+    + Q + K+I +  SEG RE L  +L    L+     S+ D SLA     
Sbjct: 388  NVFDAAIAHVRDLQKSKKVILAGWSEGSRERLGTVLADHGLKGCAAISRFD-SLAALPRN 446

Query: 425  KYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKP 484
            + +L +   E GF   D   A+I E D+LGDR+++ +RK  R        V+  L  L  
Sbjct: 447  QAALAVFGVEAGFETPD--FAVIGEQDILGDRLVRPKRKARRPQ-----DVLTELTALTA 499

Query: 485  GQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEA 544
            G  VVH+DHGIGR++GL+T+EA G   + + L Y    KL++PV +L L+SRY G  +  
Sbjct: 500  GDLVVHVDHGIGRFIGLKTVEAMGAPHDCLELHYAGGDKLFLPVENLELLSRY-GSEDTE 558

Query: 545  AQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPF 604
            AQL KLGG AW + + +  +++R++A+EL+ + A+R++    K       Y  F+A FP+
Sbjct: 559  AQLDKLGGGAWQQRKARMKKRIREMASELIKIAAQRQLGEAPKLVPAMGLYDEFRARFPY 618

Query: 605  EETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTT 664
            EETDDQ  AI++VL D+     MDRL+CGDVGFGKTEVA+RAAF    +GKQVAV+VPTT
Sbjct: 619  EETDDQEAAIDSVLDDLASGHPMDRLICGDVGFGKTEVALRAAFAVALSGKQVAVVVPTT 678

Query: 665  LLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIR 724
            LLA+QHF+ F DRF  LP+ V   SR  + K+   + + ++DG VDI+VGTH LL   I 
Sbjct: 679  LLARQHFKTFSDRFHGLPVNVAQASRMVTGKDLTAVKKGISDGTVDIVVGTHALLGKAIS 738

Query: 725  FADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP 784
            F DLGL+IVDEE  FGV  KE++K +RA+V +LTLTATPIPRTL +AM+G+R+LSIIATP
Sbjct: 739  FKDLGLVIVDEEQHFGVSHKERLKQLRAEVHVLTLTATPIPRTLQLAMTGVRELSIIATP 798

Query: 785  PARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARIT 844
            P  RLA++TF+   +  V+REA+LRE  RGGQ +++  ++E + +V   L   VPE ++ 
Sbjct: 799  PVDRLAVRTFITPFDPLVVREALLRERYRGGQSFYVMPRIEDLGEVREFLAASVPEVKVA 858

Query: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904
            VAHGQ+    LE +M  FY  ++++L+ TTI+E+G+DVP ANT+I+ RAD  GLAQL+QL
Sbjct: 859  VAHGQLAAGALEDIMTAFYDGQYDVLLSTTIVESGLDVPNANTLIVHRADMFGLAQLYQL 918

Query: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964
            RGRVGR+  +AYA    P  K +T  A +RL+ + SLE LGAGF LA+HDL+IRGAG LL
Sbjct: 919  RGRVGRAKARAYAIFTVPATKPVTVQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLL 978

Query: 965  GEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPD 1024
            G+EQSG I+ VG+ LY EML++A+  +K+G    +DD  +    + + +P L+PE+Y+ D
Sbjct: 979  GDEQSGHIKEVGYELYQEMLQEAIAHIKAGITDYVDD--KWSPNITIGMPVLIPEDYVAD 1036

Query: 1025 INTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIE 1084
            ++ RL++Y+++A +    E+     EL+DRFG  P+    LL + ++K  A +  V K++
Sbjct: 1037 LHVRLALYRRLADIQDDAEIDSFGAELVDRFGPTPEEVGQLLKLTQIKALARKANVEKVD 1096

Query: 1085 AHERGGYVEFYPNADINPVFLVKLLQSQ 1112
            A  +G  + F  N   +P  LVKL+ ++
Sbjct: 1097 AGPKGVVLTFRNNEFSDPSGLVKLIANE 1124