Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., Transcription-repair coupling factor from Variovorax sp. SCN45

 Score = 1030 bits (2664), Expect = 0.0
 Identities = 550/1133 (48%), Positives = 738/1133 (65%), Gaps = 17/1133 (1%)

Query: 30   ALAIAELA---NAHTSHTLLAVPDPQTALKLLHEVEQFSHS-EVALFPDWETLPYDNFSP 85
            AL +A+LA    A    T +   D   A +L+ E+  F+     ALFPDWETLPYD+FSP
Sbjct: 23   ALLLAQLAMREKAAGRATAMFTADANDAQRLIDEIAFFAPELRCALFPDWETLPYDSFSP 82

Query: 86   HQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDKLRL 145
            HQD+IS+R++ L+++      + +VP +T L R +P  FL  +T   K        KL+ 
Sbjct: 83   HQDLISERLATLWRISQKEADVVLVPATTALYRLAPPAFLAGYTFHFKAKQKLEESKLKA 142

Query: 146  QLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQRSI 205
            QL  + Y HV QV  PGEYA RG ++DLFPMGS  PFR+D FDDEID+IRTFDPD QRS+
Sbjct: 143  QLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSPVPFRVDLFDDEIDSIRTFDPDTQRSL 202

Query: 206  AEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYWQPL 265
              + E+RLLP  EFP    A   FR RWR+  E       +Y  +  G   AGIEY+ PL
Sbjct: 203  YPVPEVRLLPGREFPMDEDARGRFRGRWRELLEGDPTKSRIYKDMGNGVATAGIEYYLPL 262

Query: 266  FFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLRPLLPPNELWLRK 325
            FF+ + T+FDYL  ++ +++ G+LE A   F  D + RY     DP RP LPP  L+L  
Sbjct: 263  FFDETATVFDYLGPDATVVLHGDLEPAFQHFWQDTNERYRLVRGDPERPALPPEALFLNA 322

Query: 326  DELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAALRQFSEQFTGK 385
            ++ +   K   Q+ +     ++      A+   LP  AV    ++PL  L+    +   +
Sbjct: 323  EQFYQRAKPHAQLAIRG---DVPTEAPYAEFDRLPPFAVVRGAEDPLVGLKAHIAKTPHR 379

Query: 386  IIFSVESEGRREALLELLQRIKLRPQSQNDFS-LACQQTEKYSLVLGSAERGFIYGDNQV 444
            ++   ES+GRRE+LL+ L+   + P + +  +       EK  +   +   GF + +  +
Sbjct: 380  VLLIAESDGRRESLLDFLRASGVNPPAFDSLAEFEASADEKVGIATAALASGFAWREQGI 439

Query: 445  ALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDHGIGRYLGLQTL 504
             L+ E++L       RRR K ++ V++ +A+I++L+EL  G PVVH  HGIGRY GL  +
Sbjct: 440  DLVTETELFATAPTTRRRNKKQEQVSDVEALIKDLSELNVGDPVVHTAHGIGRYRGLIHM 499

Query: 505  EAGG--------MVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGEAWV 556
            + G         ++ E + LEY ++A LYVPVS L+ ISRY+G + + A LHKLG   W 
Sbjct: 500  DLGQGTDAEGKPLLQEMLHLEYADKATLYVPVSQLHQISRYTGVSADEAPLHKLGSGQWE 559

Query: 557  KARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINA 616
            KA+RKAAE+VRD AAELL++YA+R  + G  F      Y  F   F F+ET DQ  AI+A
Sbjct: 560  KAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSPADYEVFANDFGFQETADQKAAIHA 619

Query: 617  VLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRD 676
            V+ DM   + MDRLVCGDVGFGKTEVA+RAAF+A   GKQVA L PTTLLA+QH++   D
Sbjct: 620  VVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQVAFLAPTTLLAEQHYQTLVD 679

Query: 677  RFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEE 736
            RFA  P++V  +SRF+SAKE     + +A+G+VDI+VGTHKLLS  ++F +LGLLI+DEE
Sbjct: 680  RFAKWPVKVAEMSRFRSAKEITAAAKGLAEGQVDIVVGTHKLLSQSVKFKNLGLLIIDEE 739

Query: 737  HRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVR 796
            HRFGVR KE +KAMRA+VD+LTLTATPIPRTL MA+ G+RDLS+IAT P RRLAIKTFVR
Sbjct: 740  HRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVR 799

Query: 797  QSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELE 856
                 VIREAVLRE+ RGGQVYFLHN+VETI+     LE+++PEARI VAHGQM ERELE
Sbjct: 800  NEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILPEARIAVAHGQMPERELE 859

Query: 857  KVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAY 916
            +VM DF  QR+NLL+C+TIIETGIDVPTANTI+M RAD  GLAQLHQLRGRVGRSHHQAY
Sbjct: 860  RVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAY 919

Query: 917  AYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVG 976
            AYL+ P  + +TK A +RL+AI  +E+LG+GF LA HDLEIRG GE+LGE QSG +  +G
Sbjct: 920  AYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRGTGEVLGESQSGNMTEIG 979

Query: 977  FTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYKQIA 1036
            F LY EML +AV ALK+G+EP L   L   TE+ +  PALLP++Y  D++ RLS YK++A
Sbjct: 980  FQLYNEMLSEAVRALKAGQEPDLLSPLSVTTEINLHAPALLPDDYCGDVHLRLSFYKKLA 1039

Query: 1037 SVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYP 1096
            +  + D++  L  E++DRFGKLP  A  L+    L++ A    V K++A      + F  
Sbjct: 1040 TAKTPDQIDTLLEEIVDRFGKLPPQAQTLIDTHRLRVLARPYGVVKVDAAPGIINITFKK 1099

Query: 1097 NADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQ 1149
            +  ++ + +++L+Q   K + + G  KL+    L E   R Q V D+L++  Q
Sbjct: 1100 DPPVDGMAIIQLIQKN-KHIKLAGNEKLRIERELKEPKERAQMVRDVLRSLGQ 1151