Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1158 a.a., Transcription-repair coupling factor from Sphingobium sp. HT1-2

 Score =  739 bits (1908), Expect = 0.0
 Identities = 447/1132 (39%), Positives = 641/1132 (56%), Gaps = 30/1132 (2%)

Query: 33   IAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALF--PDWETLPYDNFSPHQDII 90
            IA  A+   +   + V   +  ++ + E   +   E+ L   P W+ LPYD  SP     
Sbjct: 31   IARAAHGSDATRAVFVASDEQLMRAVAETAHYFAPEIELIEIPAWDCLPYDRASPSLRTA 90

Query: 91   SDRISRLYQLPSLTRG--ITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDKLRLQLE 148
            S R++ L+ L +  +G  + +  ++ L QR      + Q    +   +  ++ +L   L+
Sbjct: 91   SARLAGLHALQAKPKGPQLVLTTLNALTQRTLTPFRVRQLVARLAPKERIAITRLADMLQ 150

Query: 149  NSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQRSIAEM 208
            ++ Y   D V   GE+A RG I+DLFP G   P R+DFF DEI+T+R FDP +QR+   +
Sbjct: 151  SNGYVRTDTVHDRGEFAIRGGIVDLFPGGEEQPLRLDFFGDEIETVRRFDPTDQRTTGSV 210

Query: 209  DEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYWQPLFFE 268
            D   LLPA E       I+ FR R+R+ F A    + +Y  VS+G   AG+E+W PLF E
Sbjct: 211  DGFTLLPASEALLDEDTIKRFRGRYRETFGATATGDPLYQAVSEGRRLAGMEHWLPLFEE 270

Query: 269  HSETLFDYLPANSQLL----VVGELEKAIDQFLTDVDYRYDQRNIDP--LRPLLPPNELW 322
                L D+L  ++ ++    VVG  +   +        R   ++ DP   RPL  P  L+
Sbjct: 271  KLVPLTDHLGDDAIIVRDHGVVGAADARFEAIRDYHANRIAAKSADPGAYRPL-KPEALY 329

Query: 323  LRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEH-QNKEPLAALRQFSEQ 381
            L   E  A     P    T       A  ++  V      A E  QN     A+ +  + 
Sbjct: 330  LDAAEWDASAAVWPMHATTPFHEPESATVLDFAVDGPRDFAPERAQNVNVYEAVGKHIDA 389

Query: 382  FTG---KIIFSVESEGRREALLELLQR---IKLRPQSQNDFSLACQQTEKYSLVLGSAER 435
                  K++ +  S G RE L  LL      +L        +L         L +   + 
Sbjct: 390  LRRTKKKVVIASYSAGARERLSGLLADHGVARLAAADSWQEALGTAAGGSAVLTVLGLDH 449

Query: 436  GFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDHGI 495
            GF   D  VA++ E D+LGDR+++R ++K      ++DA +  LA L PG  VVH+DHGI
Sbjct: 450  GFTAPD--VAVLTEQDMLGDRLVRRAKRKK-----SADAFLAELATLSPGDLVVHMDHGI 502

Query: 496  GRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGEAW 555
            GRY GL  +       + V L Y    KLYVPV +L ++SRY G   E   L KLGGEAW
Sbjct: 503  GRYEGLTQIPVSKTAHDCVALSYAGGDKLYVPVENLEVLSRY-GSDSEGVSLDKLGGEAW 561

Query: 556  VKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAIN 615
             + + +  E++R++A ELL   A+R ++P      D   Y  F   FP++ETDDQ  AI 
Sbjct: 562  QRRKARMKERIREIAGELLKTAAERALRPAEIAEPDAAGYPAFVDRFPYQETDDQDRAIG 621

Query: 616  AVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFR 675
             V+ D+   + MDRLVCGDVGFGKTEVA+RAAFVA   G QV V+ PTTLLA+QH  NF 
Sbjct: 622  DVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICPTTLLARQHHMNFV 681

Query: 676  DRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDE 735
            +RF   P+ +  LSR    KE K     +ADG +DI+VGTH LL+  + F  LGL+IVDE
Sbjct: 682  ERFRGFPLEIARLSRLVPDKEAKATKAGLADGTIDIVVGTHALLAKGLEFKRLGLVIVDE 741

Query: 736  EHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFV 795
            E RFGV  KE++K+++ DV +LTLTATPIPRTL MAMSG+R+LS+I TPP  RLA++T++
Sbjct: 742  EQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRTYI 801

Query: 796  RQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMREREL 855
               +  VIREA+LRE  RGGQ +F+  ++  + +V   L   VPE +  VAHGQM   ++
Sbjct: 802  MPWDGVVIREALLREHYRGGQSFFVVPRISDLTEVEEFLRTEVPEVKPIVAHGQMSATDV 861

Query: 856  EKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQA 915
            E+ M+ FY +R+++L+ TTI+E+G+D+P+ANT+I+ RAD  GLAQL+QLRGRVGRS  +A
Sbjct: 862  EERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRADRFGLAQLYQLRGRVGRSKTRA 921

Query: 916  YAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSV 975
            YAY  TP  + IT+ A KRL+ ++ L+ LGAGF LA+HDL+IRGAG L+G+EQSG I+ V
Sbjct: 922  YAYFTTPANRIITETAEKRLKVLSDLDTLGAGFQLASHDLDIRGAGNLVGDEQSGHIKEV 981

Query: 976  GFTLYMEMLEQAVEALKSGKE--PALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033
            GF LY  MLE A+   K+G     A  D    Q  V+   P ++PEE++PD++ R+ +Y+
Sbjct: 982  GFELYQSMLEDAIMDAKAGGAGLEARRDSFSPQISVD--APIMIPEEFVPDLDLRMGLYR 1039

Query: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVE 1093
            +I  +  +  L     ELIDRFGKLP    NLL I E+K N ++  + KI+   +G  V 
Sbjct: 1040 RINELEDRQGLEAFAAELIDRFGKLPAPTQNLLKIIEIKQNCLKANIAKIDVGPKGALVS 1099

Query: 1094 FYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLK 1145
            F+ +   +P  LV  +Q    +  +   +K+  T    + +AR+     + K
Sbjct: 1100 FFEDRFPSPAGLVAYVQRLDGVARLRPDSKVVVTRAWPDPAARLNGALQLSK 1151