Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 692 a.a., junction-specific ATP-dependent DNA helicase from Pseudomonas putida KT2440

 Score =  227 bits (578), Expect = 3e-63
 Identities = 144/391 (36%), Positives = 213/391 (54%), Gaps = 19/391 (4%)

Query: 596 ATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGK 655
           A + A   F+ T  Q    N +  D+ Q + M RLV GDVG GKT VA  AA  A + G 
Sbjct: 260 AQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDVGAGKTVVAALAALQALEAGY 319

Query: 656 QVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGT 715
           QVA++ PT +LA+QH+  F+     L I V  L+     K +   L+ +A+G   ++VGT
Sbjct: 320 QVALMAPTEILAEQHYITFKRWLEPLGIEVAWLAGKLKGKARAASLEQIANG-APMVVGT 378

Query: 716 HKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDI----LTLTATPIPRTLNMA 771
           H L   E+RF  L L I+DE+HRFGV+Q+  ++      ++    L +TATPIPRTL M+
Sbjct: 379 HALFQEEVRFKHLALAIIDEQHRFGVQQRLALRRKGVAGELCPHQLIMTATPIPRTLAMS 438

Query: 772 MSGMRDLSIIATPPARRLAIKT-FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKV 830
                D S++   P  R  + T  V  S    + E V      G Q Y++   +E  +++
Sbjct: 439 AYADLDTSVLDELPPGRTPVNTVLVADSRRFEVVERVRAACAEGRQAYWVCTLIEESEEL 498

Query: 831 AA--------DLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDV 882
                     +L   + E ++ + HG+M+  E  ++M +F      LLV TT+IE G+DV
Sbjct: 499 TCQAAESTYEELGSALGELKVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEVGVDV 558

Query: 883 PTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLE 942
           P A+ +I++  + LGLAQLHQLRGRVGR    ++  LL  PP  +++   +RL  +    
Sbjct: 559 PNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHPP--LSQIGRERLGIMRETN 616

Query: 943 DLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
           D   GF +A  DLE+RG GE+LG  Q+G +Q
Sbjct: 617 D---GFIIAEKDLELRGPGEMLGTRQTGLLQ 644