Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 1271 bits (3290), Expect = 0.0
 Identities = 641/1127 (56%), Positives = 842/1127 (74%), Gaps = 2/1127 (0%)

Query: 5    SLLSLFSAQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQF 64
            S+L L        K+  GNL GA+L+LAIAE A++    TLL   D Q A +L  E+  F
Sbjct: 2    SVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFF 61

Query: 65   SHSEVAL-FPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRD 123
            +     L FPDWETLPYD FSPHQDIIS RI+ LY+LP L+ GI +VP++T L R +P  
Sbjct: 62   APDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTR 121

Query: 124  FLLQHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFR 183
            FLL  +L++  G    ++++RL+LE S YR VD V+  GE+A RG+++DLFPMGS  P+R
Sbjct: 122  FLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYR 181

Query: 184  IDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREP 243
            ID FD+EI+T+RTFDP+ QRSI ++D +RLLPA EFP     +  F+ R+R+RF+     
Sbjct: 182  IDLFDNEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRR 241

Query: 244  ESVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYR 303
             +++  ++ G  PAGIEY+ PLFFE + TLFDYLP ++Q+  +  +E+A + F  DV  R
Sbjct: 242  SAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGR 301

Query: 304  YDQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLA 363
            Y+ R  D  RPLLPP EL+L  ++ FA  K  P+V ++S  +E   GR     + LP LA
Sbjct: 302  YEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALPNLA 361

Query: 364  VEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQT 423
            +E +  +PLA L  F +QF G+++F+ ES GRRE LLELL+R+KLRP +   +       
Sbjct: 362  IEAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITGA 421

Query: 424  EKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELK 483
            E+ ++ +   + G +  D  +ALI ES L G RV+QRRR+ D++  T +DAVI+NL EL+
Sbjct: 422  ERLAITIAPLDDGLLLDDPGLALIAESPLFGQRVMQRRRR-DKRGETANDAVIKNLTELR 480

Query: 484  PGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEE 543
             G PVVHIDHG+GRYLGL TLE  G  +E++ LEY   AKLYVPV++L+LI+RY+G  + 
Sbjct: 481  EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA 540

Query: 544  AAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFP 603
             A LH+LG EAW KA+RKAAE+VRDVAAELLD+YA+R  + G+ F      YATF A FP
Sbjct: 541  LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFP 600

Query: 604  FEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPT 663
            FEET DQ  AI AV +DM   K MDRLVCGDVGFGKTEVAMRAAF+A  +G+QVAVLVPT
Sbjct: 601  FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT 660

Query: 664  TLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEI 723
            TLLAQQH+ +FRDRFA+ P+ VEV+SRFKSAKE      D+A+GK+DIL+GTHKLL  ++
Sbjct: 661  TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDV 720

Query: 724  RFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIAT 783
            RF DLGL I+DEEHRFGVRQKE++KA+R++VDILTLTATPIPRTLNMA++GMRDLSIIAT
Sbjct: 721  RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT 780

Query: 784  PPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARI 843
            PPARRL+++TFV +   S ++EA+LRE++RGGQVY+LHN V+TI+K AADL +LVPEARI
Sbjct: 781  PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI 840

Query: 844  TVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQ 903
             + HGQMRERELE+VM+DFYH+RFN+LV +TIIETGIDVP+ANTI+++RAD  GLAQLHQ
Sbjct: 841  GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ 900

Query: 904  LRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGEL 963
            LRGRVGRSHHQAYAYLLTP  + ++ DA KRLEAIA+ +DLGAGF LAT+DLEIRGAGEL
Sbjct: 901  LRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL 960

Query: 964  LGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIP 1023
            LGE QSGQIQ+VGFTLYMEMLE+AV+A++ G +P L+  L    E+ +RLPAL+PE+Y+P
Sbjct: 961  LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP 1020

Query: 1024 DINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKI 1083
            D++ RL +YK+IAS A ++ L +L+VE+IDRFG LP+   NL+ +  LKL+A +L ++K+
Sbjct: 1021 DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKV 1080

Query: 1084 EAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPL 1130
            +A   GG +EF     ++P+ L+KL+Q QPK    +G T+ +F +P+
Sbjct: 1081 DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPM 1127