Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1123 a.a., transcription-repair coupling factor from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  631 bits (1627), Expect = 0.0
 Identities = 381/1083 (35%), Positives = 592/1083 (54%), Gaps = 88/1083 (8%)

Query: 21   IGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQF--SHSEVALFPDWETL 78
            I  L G+  A+  + +   +  H L  + D + A     +++       E+ LFP     
Sbjct: 33   IKGLAGSQDAVLASAVYTLNYGHQLFVMHDKEEAAYFYTDLKNLLGEEKEILLFPTSYKR 92

Query: 79   PYDNFSPHQDIISDRISRLYQLPSLT-RGITIVPV-STLLQRQSPRDFLLQHTLIVKRGD 136
            PY         I  R   L +L   T +G  IV     L ++   +  L+++TL  K G+
Sbjct: 93   PYSFDDTENANILMRAEVLNRLNQKTGKGELIVTYPEALTEKVINKKSLVENTLGAKIGE 152

Query: 137  HFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRT 196
                  L   L    +   + V+  G+YA RG I+D++   +  P+RI+ F DEI++IRT
Sbjct: 153  KLDTTFLSEMLAEYGFERTEFVYEAGQYAVRGGIVDVYSYANDLPYRIELFGDEIESIRT 212

Query: 197  FDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWP 256
            FDPD Q S+     I ++P  +                                      
Sbjct: 213  FDPDTQLSVETKKAISIIPNVQ-------------------------------------- 234

Query: 257  AGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQ--RNIDPLRP 314
                    L  E  E   D+LP N+ L       K +   L  +D  +D+   N + +  
Sbjct: 235  ------TKLLQETREAFLDFLPNNTTLWF-----KDVRLTLDVIDEYFDKASHNFEKMMA 283

Query: 315  LLPPNELWLRKDELFAHFKTLPQVQLTSSPIEL--RAGRMNAQVQPLPVLAVEHQNKEPL 372
                 ++    ++LF   K   ++    + +E+  R    N +V  L        NK+  
Sbjct: 284  TSGGTQIVSDPEQLFQTQKQFKKLLEKYTVVEIGKRFHFKNTEVMQLQAKPQPSFNKDFK 343

Query: 373  AALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTE---KYSLV 429
              ++   EQ     +  + ++                P+  N  ++   + +   ++  +
Sbjct: 344  RLVKDLHEQQGAGFVNVIATDS---------------PRQINRLTMIFDELDHDVRFQHL 388

Query: 430  LGSAERGFIYGDNQVALICESD-LLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPV 488
              S   GFI  D  + + C +D  L DR  Q + K       +    ++ L  L+PG  V
Sbjct: 389  PVSLREGFI--DQTLKITCYTDHQLFDRFYQHKAKTGHSK--SKAMTLKELRSLQPGDYV 444

Query: 489  VHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLH 548
             H D+GIGR+ GL+ +E GG + E + L Y+++  LYV + +L+ IS+YSG       + 
Sbjct: 445  THTDYGIGRFAGLEKVEVGGRLQEAIRLVYRDDDLLYVSIHALHKISKYSGKEGGPPSMS 504

Query: 549  KLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETD 608
            KLG   W   ++K   KV+D+A EL+ +YAKR+  PG+ +  D    A  +++F +E+T 
Sbjct: 505  KLGSPEWENKKKKVKSKVKDIAHELISLYAKRKAAPGYAYTRDGFLQAELESSFIYEDTP 564

Query: 609  DQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQ 668
            DQ  A   V +DM Q   MDRLVCGDVGFGKTE+A+RAAF A  +GKQVA+LVPTT+LA 
Sbjct: 565  DQGKATEDVKADMEQPHPMDRLVCGDVGFGKTEIAIRAAFKAACDGKQVAILVPTTILAM 624

Query: 669  QHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADL 728
            QH+  FRDR    P+ V+ ++RFK+AK+ K  L+ VA+GKVDIL+GTH+++S +++F DL
Sbjct: 625  QHYRTFRDRLEQFPVTVDYVNRFKTAKDTKDTLKRVAEGKVDILIGTHRIVSKDVKFKDL 684

Query: 729  GLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 788
            GL+I+DEE +FGV+ KEK+K M+ +VD LTLTATPIPRTL+ ++ G RDLS+IATPP  R
Sbjct: 685  GLMIIDEEQKFGVKTKEKLKEMKINVDTLTLTATPIPRTLHFSLMGARDLSVIATPPPNR 744

Query: 789  LAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHG 848
              +KT +   ++++IR+A++ E+ RGGQV+F+HN+++ I+++AA + + VP+ ++T AHG
Sbjct: 745  QPVKTELHVFDEALIRDAIVYEMKRGGQVFFVHNRIKDIEEIAAMILRHVPDCKVTYAHG 804

Query: 849  QMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRV 908
            QM   +LEK M  F +  +++LV T IIE+G+D+  ANTII++RA   GL+ LHQ+RGRV
Sbjct: 805  QMEPEKLEKRMMKFVNGEYDVLVSTNIIESGLDIENANTIIINRAHMFGLSDLHQMRGRV 864

Query: 909  GRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQ 968
            GRS+ +AY YLLTPP   +  DA KRL  +    DLG GF +A  DL+IRGAG LLG EQ
Sbjct: 865  GRSNKKAYCYLLTPPVAGLPSDARKRLSTLEEFSDLGEGFKIAMRDLDIRGAGNLLGGEQ 924

Query: 969  SGQIQSVGFTLYMEMLEQAVEALKSG--KEPALDDLLRE------QTEVEMRLPALLPEE 1020
            SG I  +GF +Y ++L+ A++ LK    ++  L+D L E      +  +E  +  L+P+ 
Sbjct: 925  SGFITDLGFEMYHQVLDDAIKELKETEFRDLFLNDNLAEFIEPVRECNIETDMEVLIPDW 984

Query: 1021 YIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKV 1080
            Y+ +I+ RL++Y ++ S     EL +L+  ++DRFG LP+A   L+ I +L+  A +L  
Sbjct: 985  YVSNISERLNLYSKLDSTKDLQELEKLRESIVDRFGPLPEAVQQLVEIVKLRWQAQQLGF 1044

Query: 1081 RKI 1083
             K+
Sbjct: 1045 EKL 1047