Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1034 bits (2673), Expect = 0.0
 Identities = 553/1149 (48%), Positives = 753/1149 (65%), Gaps = 20/1149 (1%)

Query: 16   GDKKAIGNLHGASLALAIAELA---NAHTSHTLLAVPDPQTALKLLHEVEQFSHS-EVAL 71
            G +  + +  G++ AL +A+L     A    T +   D   A +L+ E+  F+     AL
Sbjct: 9    GKRHTVPHPGGSADALMLAQLGAREKAEGRLTAIVTADANDAQRLIDEMAFFAPGLRCAL 68

Query: 72   FPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRG----ITIVPVSTLLQRQSPRDFLLQ 127
            FPDWETLPYD FSPHQD+IS+R++ L+++    +     + ++P +T L R +P  FL  
Sbjct: 69   FPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRLAPPSFLAG 128

Query: 128  HTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFF 187
            +T   K        +L+ QL  + Y+HV QV  PGEYA RG ++DLFPMGS  P+R+D F
Sbjct: 129  YTFHFKVKQKLDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSLVPYRVDLF 188

Query: 188  DDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVY 247
            DDEID+IRTFDPD+QRS+  ++E+RLLP  EFP   AA  +FR+RWR+  E       +Y
Sbjct: 189  DDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRSRWRELLEGDPTKSRIY 248

Query: 248  SQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQR 307
              +  G   AGIEY+ PLFF+ + T+FDYL  ++ +++ G+LE A  +F  D   R+   
Sbjct: 249  KDIGNGVATAGIEYYLPLFFDDTATVFDYLGTDATVVLHGDLEPAFQRFWQDTKDRHRLL 308

Query: 308  NIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQ 367
              D  RP+LPP  L+L  ++ +       Q  +  +  ++  G   A VQ L  L+V   
Sbjct: 309  RGDAERPVLPPEALFLATEQFYTRANEHAQYVVRPAQQDIEHG---AHVQKLGDLSVVRG 365

Query: 368  NKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYS 427
             ++PLA L+        +++   ES+GRRE+LL+ L+   + P + +  +      EK  
Sbjct: 366  AEDPLARLQAHIRNTAHRVLLLAESDGRRESLLDFLRASGVHPPAFDSLAEFQASDEKTG 425

Query: 428  LVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQP 487
            +   +   GF + D+ +  + E++L       RRR+K ++ V++ DA+I++L+EL  G P
Sbjct: 426  IATAALAVGFSWLDDGIDFVTETELFAAGPTTRRRRK-QEQVSDVDALIKDLSELNVGDP 484

Query: 488  VVHIDHGIGRYLGLQTLEAGGM-------VSEYVMLEYQNEAKLYVPVSSLNLISRYSGG 540
            VVH  HGIGRY GL  ++ G         + E++ LEY ++A LYVPVS L LI RY+G 
Sbjct: 485  VVHNAHGIGRYRGLVNMDMGEKNPDGSPALQEFLHLEYADKAVLYVPVSQLQLIGRYTGV 544

Query: 541  AEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKA 600
            + + A LHKLG   W KA+RKAAE+VRD AAELL++YA+R  + G  F    + Y  F  
Sbjct: 545  SADEAPLHKLGSGQWDKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRYSAQDYEVFAN 604

Query: 601  TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660
             F FEET DQ  AI+AV+ DM   + MDRLVCGDVGFGKTEVA+RAAFVA   G+QVA L
Sbjct: 605  DFGFEETADQRGAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGRQVAFL 664

Query: 661  VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720
             PTTLLA+QHF+   DRF+  P++V  +SRF+SAKE     + +ADG VDI+VGTHKLLS
Sbjct: 665  APTTLLAEQHFQTLSDRFSKWPVKVAEMSRFRSAKEITAAAKGLADGSVDIVVGTHKLLS 724

Query: 721  SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780
              ++F DLGLLI+DEEHRFGVR KE +KA+RA+VD+LTLTATPIPRTL MA+ G+RDLS+
Sbjct: 725  ESVKFKDLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSV 784

Query: 781  IATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPE 840
            IAT P RRLAIKTFVR   + VIREAVLRE+ RGGQVYFLHN+VETI+     LE+++PE
Sbjct: 785  IATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILPE 844

Query: 841  ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQ 900
            ARI +AHGQM ERELE+VM DF  QRFN+L+C+TIIETGIDVPTANTI+M RAD  GLAQ
Sbjct: 845  ARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVMSRADKFGLAQ 904

Query: 901  LHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGA 960
            LHQLRGRVGRSHHQAYAYL+ P  + +TK A +RL+AI  +E+LG+GF LA HDLEIRGA
Sbjct: 905  LHQLRGRVGRSHHQAYAYLMVPDIEGLTKHAAQRLDAIQQMEELGSGFYLAMHDLEIRGA 964

Query: 961  GELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEE 1020
            GE+LGE QSG +  VGF LY EML +AV +LK+G+EP L   L   T++ +  PALLP +
Sbjct: 965  GEVLGEHQSGNMLEVGFQLYNEMLSEAVSSLKAGREPDLLSPLSVTTDINLHAPALLPND 1024

Query: 1021 YIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKV 1080
            Y  D++ RLS YK++A+  S D++  L  E++DRFGKLP  A  L+ +  L+  +    V
Sbjct: 1025 YCGDVHLRLSFYKKLATAKSTDQVDALLEEIVDRFGKLPPQAQTLIDVHRLRCISTPYGV 1084

Query: 1081 RKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFV 1140
             K++A      + F  N    P+ +++L+Q   + + + G  KL+   PL E   R+Q V
Sbjct: 1085 VKVDAAPGVTNITFRANPPFEPMRIIELIQKN-RHIKLAGNDKLRIERPLPEVKDRVQLV 1143

Query: 1141 ADMLKNFQQ 1149
             D+L++  Q
Sbjct: 1144 RDVLRSLGQ 1152