Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1159 a.a., transcription-repair coupling factor from Magnetospirillum magneticum AMB-1

 Score =  749 bits (1933), Expect = 0.0
 Identities = 446/1126 (39%), Positives = 654/1126 (58%), Gaps = 54/1126 (4%)

Query: 16   GDKKAIGNLHGASLALAIAELANAHTSHT-LLAVPDPQTALKLLHEVEQFSHSEVAL--F 72
            G +K  G   G   AL +AELA    +   +L V   +  +  + E   F   ++ +  F
Sbjct: 12   GRRKLAGAPEGRD-ALLLAELAAGGCAQGGILHVARDEGRMARVAEALAFFAPDLQVLEF 70

Query: 73   PDWETLPYDNFSPHQDIISDRISRLYQLPSLTRG--ITIVPVSTLLQRQSPRDFLLQHTL 130
            P W+ +PYD  SPH D+++ RI  L +L    +G  + +  V  L QR  PR+ L   TL
Sbjct: 71   PGWDCVPYDRVSPHVDMVARRIDTLARLADGVKGAFVVLTTVPGLAQRVPPREALASATL 130

Query: 131  IVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDE 190
              ++G   S+DKL   L  + Y   D V  PGEYA RG I+DL+P GS++P R+DFF DE
Sbjct: 131  DARKGSRLSMDKLIGFLSKNGYVRADTVMEPGEYAVRGGIVDLYPPGSAEPLRLDFFGDE 190

Query: 191  IDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQV 250
            ID++R+FDP +QR+   M      P  E     A+I  FR  +R+ F     P+ +Y  +
Sbjct: 191  IDSVRSFDPMSQRTTGPMAGFVCRPVSEVGLDDASIARFRTNYREMFGVISGPDPLYEAI 250

Query: 251  SKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQR--- 307
            S+G    G+E+W PLF +  +TLF Y+P  + +L     E    +    ++Y +D R   
Sbjct: 251  SEGIKFNGMEHWLPLFHDGLDTLFAYVPEAAVVLDHQSDEALTARHALVLEY-FDARAGL 309

Query: 308  -------NIDPLRPLLPPNELWLRK---DELFA-----HFKTLPQVQLTSSPIEL--RAG 350
                   +     P+LP   L+L +   D L A     H      V+     ++   R G
Sbjct: 310  AGAGLTESGMVYHPILP-ERLYLERAEWDRLLAARPVLHLSPFDAVEGDEGAVDAGGRLG 368

Query: 351  RMNAQVQPLPVLAV-----EHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQR 405
            R  A ++  P + V     EH  ++  A  R         ++ +  ++G R+ L  +L+ 
Sbjct: 369  RDFADMRARPGVNVYDCVREHAEEQAKAGRR---------VVIAAWTQGSRDRLAGVLRD 419

Query: 406  IKLRPQSQNDFSLACQQTEKYSLVLG--SAERGFIYGDNQVALICESDLLGDRVIQRRRK 463
              ++     +     Q  +K  + +     + GF   D  +A+I E D+LGDR+ +  RK
Sbjct: 420  HGIKGIETVESWAEAQGLDKGRVAVAVLGLDHGFATPD--LAVITEQDILGDRLARPARK 477

Query: 464  KDRKNVTNSDAVIRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAK 523
            K +         I   + L  G  VVH++HGIGRY GL  LE  G   + + + Y    K
Sbjct: 478  KKK-----GAQFIAEASALAEGDLVVHVEHGIGRYDGLVALEVSGAPHDCLRVLYDGGDK 532

Query: 524  LYVPVSSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIK 583
            L+VPV ++++++R+ G  +    L KLGG AW   + K  +++RD+A +L+ + A+R+++
Sbjct: 533  LFVPVENIDVLTRF-GSEQAGVSLDKLGGTAWQARKAKLKKRIRDIADQLIGIAAQRKMR 591

Query: 584  PGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVA 643
             G         Y  F A FPF ET+DQ  AI   ++D+   K MDRL+CGDVGFGKTEVA
Sbjct: 592  QGEALVPAEGLYDEFCARFPFAETEDQMRAIEDSIADLASGKPMDRLICGDVGFGKTEVA 651

Query: 644  MRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQD 703
            MR AFVA   G QVAV+VPTTLLA+QH+  F++RF+ LP+RVE LSR  +AK   ++   
Sbjct: 652  MRVAFVAALQGLQVAVVVPTTLLARQHYRTFKERFSGLPVRVEQLSRLVTAKTASEVKAG 711

Query: 704  VADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATP 763
            VADG VD++VGTH LL+  I F  LGLLI+DEE  FGV  KE++K ++ADV +LTLTATP
Sbjct: 712  VADGSVDVVVGTHALLAKGIGFKRLGLLIIDEEQHFGVAHKERLKQLKADVHVLTLTATP 771

Query: 764  IPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQ 823
            IPRTL MA+SG++++S+IATPP  RLA++TFV   +  V+RE++LRE  RGGQV+++  +
Sbjct: 772  IPRTLQMALSGVKEMSVIATPPIDRLAVRTFVLPYDPVVLRESILRERYRGGQVFYVCPR 831

Query: 824  VETIDKVAADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVP 883
            +  ID+VA  L KLVPE +  VAHG++   +LE+VM  F  +++++L+ T IIE+GID+P
Sbjct: 832  LADIDRVAERLAKLVPEVKTAVAHGRLAPADLEEVMVAFGEKQYDVLLSTNIIESGIDMP 891

Query: 884  TANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLED 943
            + NT+I+ RAD  GL QL+QLRGRVGR   + YAY   P  K ++K A KRL+ + +L+ 
Sbjct: 892  SVNTLIIHRADMFGLGQLYQLRGRVGRGKTRGYAYFTLPNDKVLSKAAEKRLQVMQALDT 951

Query: 944  LGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLL 1003
            LGAGF LA+HDL+IRGAG LLGEEQSG I+ VG  LY ++LE+AV A K G+     +  
Sbjct: 952  LGAGFQLASHDLDIRGAGNLLGEEQSGHIREVGVELYQQLLEEAVAAAKGGQGGEAAE-- 1009

Query: 1004 REQTEVEMRLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAAL 1063
                ++ +  P L+PE Y+ D++ RLS+Y++I S+A + E+  L  ELIDRFGKLP    
Sbjct: 1010 EWSPQIAVGTPVLIPETYVADLSVRLSLYRRIGSLADQAEIEALAAELIDRFGKLPPEVE 1069

Query: 1064 NLLAIAELKLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLL 1109
            NLL +  +K       + K+++  +G  V    N   NP  LV+ +
Sbjct: 1070 NLLEVVAIKALCKLAGIDKVDSGPKGAVVSLRGNVFANPAALVQFI 1115