Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 693 a.a., ATP-dependent DNA helicase RecG (EC 3.6.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  244 bits (624), Expect = 1e-68
 Identities = 159/391 (40%), Positives = 218/391 (55%), Gaps = 25/391 (6%)

Query: 600 ATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAV 659
           A+ PF+ T  QA  +  +  DM     M RLV GDVG GKT VA  AA  A  +GKQVA+
Sbjct: 263 ASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVAL 322

Query: 660 LVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLL 719
           + PT LLA+QH  NFR+ F  L + V  L+  +  K ++   + +A G+V ++VGTH + 
Sbjct: 323 MAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIF 382

Query: 720 SSEIRFADLGLLIVDEEHRFGVRQK----EKVKAMRADVDILTLTATPIPRTLNMAMSGM 775
             +++F  L L+I+DE+HRFGV Q+    EK +        L +TATPIPRTL M     
Sbjct: 383 QEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYAD 442

Query: 776 RDLSII-ATPPAR----RLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKV 830
            D S+I   PP R     +AI    R      +R A   E   G Q Y++   +E  D +
Sbjct: 443 LDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNACTTE---GRQAYWVCTLIEESDLL 499

Query: 831 AA--------DLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDV 882
            A        +L+  +PE  I + HG+M+  E + VM  F     +LLV TT+IE G+DV
Sbjct: 500 EAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVATTVIEVGVDV 559

Query: 883 PTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLE 942
           P A+ +I++  + LGLAQLHQLRGRVGR    ++  LL   P  ++K A KRL+    L 
Sbjct: 560 PNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSP--LSKTAQKRLQV---LR 614

Query: 943 DLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
           D   GF +A  DLEIRG GELLG  Q+G  +
Sbjct: 615 DSNDGFVIAQKDLEIRGPGELLGTRQTGNAE 645