Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1465 bits (3793), Expect = 0.0
 Identities = 733/1139 (64%), Positives = 900/1139 (79%), Gaps = 5/1139 (0%)

Query: 15   AGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPD 74
            AGD++ +G L GA+ A  +AE+A  H    +L  PD Q AL+L  E+ QF+   V    D
Sbjct: 13   AGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQMVMNLAD 72

Query: 75   WETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKR 134
            WETLPYD+FSPHQ+IIS R+S LYQLPS+ RG+ IVPV+TL+QR  P  +L  H L++K+
Sbjct: 73   WETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPHSYLHGHALVMKK 132

Query: 135  GDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTI 194
            G   S D LR QL+++ YRHVDQV   GEYA+RG++LDLFPMGS  P+R+DFFDDEID++
Sbjct: 133  GQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSL 192

Query: 195  RTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGT 254
            R FD D QR++ E++ I LLPAHEFPT  AAIE FR++WR  FE +R+ E +Y QVSKGT
Sbjct: 193  RLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQVSKGT 252

Query: 255  WPAGIEYWQPLFF-EHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLR 313
             PAGIEYWQPLFF E    LF Y PAN+ ++  G LE + ++F  D   R++ R +DP+R
Sbjct: 253  LPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTLARFENRGVDPMR 312

Query: 314  PLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLA 373
            PLLPP  LWLR DELF+  K  P++QL +  +  +A   N   Q LP LA++ Q K PL 
Sbjct: 313  PLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPDLAIQAQQKAPLD 372

Query: 374  ALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSA 433
            ALR+F E F+G +IFSVESEGRREAL ELL RIK+ P+       A Q   +Y L++G+A
Sbjct: 373  ALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEA-QDAGRY-LMIGAA 430

Query: 434  ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDH 493
            E GFI     +ALICESDLLG+RV   RR+ D +   N D +IRNLAEL  GQPVVH++H
Sbjct: 431  EHGFIDTQRNLALICESDLLGERVA--RRRLDSRRTINPDTLIRNLAELHVGQPVVHLEH 488

Query: 494  GIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGE 553
            G+GRY G+ TLEAGG+  EY+ML Y N+AKLYVPVSSL+LISRY+GGAEE+A LHKLGG+
Sbjct: 489  GVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLGGD 548

Query: 554  AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMA 613
            AW +AR+KAAEKVRDVAAELLD+YA+R  K GF F  DREQY  F  +FPFE T DQA A
Sbjct: 549  AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 608

Query: 614  INAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFEN 673
            INAVLSDMCQ  AMDRLVCGDVGFGKTEVAMRAAF+A +N KQVAVLVPTTLLAQQH++N
Sbjct: 609  INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDN 668

Query: 674  FRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIV 733
            FRDRFAN P+R+E+LSRF+SAKEQ QIL + A+GK+DIL+GTHKLL S+++  DLGLLIV
Sbjct: 669  FRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLIV 728

Query: 734  DEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKT 793
            DEEHRFGVR KE++KAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA+KT
Sbjct: 729  DEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788

Query: 794  FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRER 853
            FVR+ +  V+REA+LREI+RGGQVY+L+N VE I K A  L +LVPEARI + HGQMRER
Sbjct: 789  FVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 848

Query: 854  ELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHH 913
            ELE+VMNDF+HQRFN+LVCTTIIETGID+PTANTII++RAD  GLAQLHQLRGRVGRSHH
Sbjct: 849  ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908

Query: 914  QAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
            QAYA+LLTP PKA+T DA KRLEAIASLEDLGAGF LATHDLEIRGAGELLGEEQSG ++
Sbjct: 909  QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 968

Query: 974  SVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033
            ++GF+LYME+LE AV+ALK+G+EP+L+DL  +QTEVE+R+P+LLP+++IPD+NTRLS YK
Sbjct: 969  TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028

Query: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVE 1093
            +IAS  +++EL E+KVELIDRFG LPD A NLL IA L+  A +L +RK+E +E+GG +E
Sbjct: 1029 RIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGTIE 1088

Query: 1094 FYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVL 1152
            F     ++P +L+ LLQ QP+   +DGPT+LKF   L ER  RI +V   ++  ++N +
Sbjct: 1089 FAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQQLEENAI 1147