Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 693 a.a., ATP-dependent DNA helicase (NCBI) from Escherichia coli BW25113

 Score =  240 bits (613), Expect = 2e-67
 Identities = 155/388 (39%), Positives = 215/388 (55%), Gaps = 19/388 (4%)

Query: 600 ATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAV 659
           A  PF+ T  QA  +  +  DM     M RLV GDVG GKT VA  AA  A  +GKQVA+
Sbjct: 263 AALPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVAL 322

Query: 660 LVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLL 719
           + PT LLA+QH  NFR+ FA L I V  L+  +  K +    + +A G+V ++VGTH + 
Sbjct: 323 MAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIF 382

Query: 720 SSEIRFADLGLLIVDEEHRFGVRQK----EKVKAMRADVDILTLTATPIPRTLNMAMSGM 775
             +++F  L L+I+DE+HRFGV Q+    EK +        L +TATPIPRTL M     
Sbjct: 383 QEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYAD 442

Query: 776 RDLSII-ATPPARRLAIKTFVRQSEDSVIREAVLRE-IMRGGQVYFLHNQVETIDKVAA- 832
            D S+I   PP R       +  +  + I + V    I  G Q Y++   +E  + + A 
Sbjct: 443 LDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHHACITEGRQAYWVCTLIEESELLEAQ 502

Query: 833 -------DLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTA 885
                  +L+  +PE  + + HG+M+  E + VM  F     +LLV TT+IE G+DVP A
Sbjct: 503 AAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNA 562

Query: 886 NTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLG 945
           + +I++  + LGLAQLHQLRGRVGR    ++  LL   P  ++K A  RL+    L D  
Sbjct: 563 SLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTP--LSKTAQIRLQV---LRDSN 617

Query: 946 AGFTLATHDLEIRGAGELLGEEQSGQIQ 973
            GF +A  DLEIRG GELLG  Q+G  +
Sbjct: 618 DGFVIAQKDLEIRGPGELLGTRQTGNAE 645