Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1148 a.a., transcription-repair coupling factor (NCBI) from Escherichia coli BW25113

 Score = 1473 bits (3814), Expect = 0.0
 Identities = 735/1139 (64%), Positives = 902/1139 (79%), Gaps = 5/1139 (0%)

Query: 15   AGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPD 74
            AG+++ +G L GA+ A  +AE+A  H    +L  PD Q AL+L  E+ QF+   V    D
Sbjct: 13   AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLAD 72

Query: 75   WETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKR 134
            WETLPYD+FSPHQDIIS R+S LYQLP++ RG+ IVPV+TL+QR  P  FL  H L++K+
Sbjct: 73   WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 132

Query: 135  GDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTI 194
            G   S D LR QL+++ YRHVDQV   GEYA+RG++LDLFPMGS  P+R+DFFDDEID++
Sbjct: 133  GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192

Query: 195  RTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGT 254
            R FD D+QR++ E++ I LLPAHEFPT  AAIE FR++WR  FE +R+PE +Y QVSKGT
Sbjct: 193  RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGT 252

Query: 255  WPAGIEYWQPLFF-EHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLR 313
             PAGIEYWQPLFF E    LF Y PAN+ L+  G+LE + ++F  D   R++ R +DP+R
Sbjct: 253  LPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMR 312

Query: 314  PLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLA 373
            PLLPP  LWLR DELF+  K  P+VQL +  +  +A   N   Q LP LAV+ Q K PL 
Sbjct: 313  PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 372

Query: 374  ALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSA 433
            ALR+F E F G ++FSVESEGRREAL ELL RIK+ PQ       A  +     L++G+A
Sbjct: 373  ALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY--LMIGAA 430

Query: 434  ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDH 493
            E GF+     +ALICESDLLG+RV   RR++D +   N D +IRNLAEL  GQPVVH++H
Sbjct: 431  EHGFVDTVRNLALICESDLLGERVA--RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 488

Query: 494  GIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGE 553
            G+GRY G+ TLEAGG+  EY+ML Y N+AKLYVPVSSL+LISRY+GGAEE A LHKLGG+
Sbjct: 489  GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 548

Query: 554  AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMA 613
            AW +AR+KAAEKVRDVAAELLD+YA+R  K GF F  DREQY  F  +FPFE T DQA A
Sbjct: 549  AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 608

Query: 614  INAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFEN 673
            INAVLSDMCQ  AMDRLVCGDVGFGKTEVAMRAAF+A DN KQVAVLVPTTLLAQQH++N
Sbjct: 609  INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 668

Query: 674  FRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIV 733
            FRDRFAN P+R+E++SRF+SAKEQ QIL +VA+GK+DIL+GTHKLL S+++F DLGLLIV
Sbjct: 669  FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 728

Query: 734  DEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKT 793
            DEEHRFGVR KE++KAMRA+VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA+KT
Sbjct: 729  DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788

Query: 794  FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRER 853
            FVR+ +  V+REA+LREI+RGGQVY+L+N VE I K A  L +LVPEARI + HGQMRER
Sbjct: 789  FVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 848

Query: 854  ELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHH 913
            ELE+VMNDF+HQRFN+LVCTTIIETGID+PTANTII++RAD  GLAQLHQLRGRVGRSHH
Sbjct: 849  ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908

Query: 914  QAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
            QAYA+LLTP PKA+T DA KRLEAIASLEDLGAGF LATHDLEIRGAGELLGEEQSG ++
Sbjct: 909  QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 968

Query: 974  SVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033
            ++GF+LYME+LE AV+ALK+G+EP+L+DL  +QTEVE+R+P+LLP+++IPD+NTRLS YK
Sbjct: 969  TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028

Query: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVE 1093
            +IAS  +++EL E+KVELIDRFG LPD A  LL IA L+  A +L +RK+E +E+GG +E
Sbjct: 1029 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088

Query: 1094 FYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVL 1152
            F     +NP +L+ LLQ QP+   +DGPT+LKF   L ER  RI++V   ++  ++N +
Sbjct: 1089 FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAI 1147