Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 693 a.a., ATP-dependent DNA helicase RecG from Erwinia tracheiphila SCR3

 Score =  233 bits (594), Expect = 4e-65
 Identities = 150/390 (38%), Positives = 212/390 (54%), Gaps = 23/390 (5%)

Query: 600 ATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAV 659
           A  PF  T  Q   +  +  D+ Q   M RLV GDVG GKT VA  AA      GKQVA+
Sbjct: 263 AALPFSPTGAQQRVVAEIEQDLAQNHPMLRLVQGDVGSGKTLVAALAALNVIAWGKQVAL 322

Query: 660 LVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLL 719
           + PT LLA+QH  NFR  F  L I V  L+  +  K ++   Q +A G+V ++VGTH + 
Sbjct: 323 MAPTELLAEQHANNFRQWFGPLGIEVGWLTGKQKGKAREAQQQAIASGQVLMIVGTHAIF 382

Query: 720 SSEIRFADLGLLIVDEEHRFGVRQ----KEKVKAMRADVDILTLTATPIPRTLNMAMSGM 775
             ++ F  L L+I+DE+HRFGV Q    +EK +        L +TATPIPRTL M     
Sbjct: 383 QEQVSFHGLALVIIDEQHRFGVHQRLALREKGEEQGFHPHQLIMTATPIPRTLAMTAYAD 442

Query: 776 RDLSIIATPPARRLAIKTF----VRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVA 831
            D S I   P  R  + T      R++E  +I    L     G Q Y++   +E  D++ 
Sbjct: 443 LDTSTIDELPPGRTPVTTVAIPDTRRAE--IIERVRLACGEEGRQAYWVCTLIEESDQLE 500

Query: 832 A--------DLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVP 883
           A        +++  +P  ++ + HG+M+ +E + +M  F     +LL+ TT+IE G+DVP
Sbjct: 501 AQAAEATWEEMKLALPSLQVGLVHGRMKPKEKQAIMLTFKQGAIDLLIATTVIEVGVDVP 560

Query: 884 TANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLED 943
            A+ +I++  + LGLAQLHQLRGRVGR    ++  LL   P  +++ A  RL+    L D
Sbjct: 561 NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYKTP--LSRGAQTRLQV---LRD 615

Query: 944 LGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
              GF +A  DLEIRG GELLG  Q+G  +
Sbjct: 616 SNDGFVIAQRDLEIRGPGELLGTRQTGNAE 645