Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1147 a.a., transcription-repair coupling factor from Erwinia tracheiphila SCR3

 Score = 1443 bits (3735), Expect = 0.0
 Identities = 719/1139 (63%), Positives = 891/1139 (78%), Gaps = 9/1139 (0%)

Query: 15   AGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPD 74
            AGD++ +G L GA+ A+  AE+   H    +L  PD Q AL+L  E++QF+   V    D
Sbjct: 13   AGDQRQLGQLTGAACAVESAEIIARHQGPVVLITPDMQNALRLHDEIKQFTCETVINLAD 72

Query: 75   WETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKR 134
            WETLP+D+FSPHQ+IIS R+S L+ LP +  G+ I+PV+TL+Q   P  FL  H L++K+
Sbjct: 73   WETLPFDSFSPHQEIISSRLSTLHALPYMAHGVLILPVNTLMQLVCPHSFLHGHALVMKK 132

Query: 135  GDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTI 194
            G H S D LR QLE + YRHVDQV   GEYA+RG++LD+FPMGS  P+RID FD+EID++
Sbjct: 133  GQHLSRDTLRSQLEQAGYRHVDQVMEHGEYATRGALLDIFPMGSLQPYRIDLFDEEIDSL 192

Query: 195  RTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGT 254
            R FD D+QR++ E+  I LLPAHEFPT   AIE FR RWR+ F+ RREPE +Y QVSKGT
Sbjct: 193  RLFDVDSQRTLEEVSAINLLPAHEFPTDKTAIELFRTRWREHFDVRREPEHIYQQVSKGT 252

Query: 255  WPAGIEYWQPLFFEHSET-LFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLR 313
             PAGIEYWQPLFF+     LF YLPANS L+  G +E + D+F  DV+ R++ R +DP+R
Sbjct: 253  LPAGIEYWQPLFFDQPLVPLFSYLPANSLLVTCGNVETSADRFWQDVNRRFENRRVDPMR 312

Query: 314  PLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLA 373
            PLL P+ LWLR D+LF+  K  P+VQ     +  +A  +N   QPLP LAV+ Q K PL 
Sbjct: 313  PLLAPDTLWLRTDQLFSELKKWPRVQFKHDALAEKASNINLGYQPLPDLAVQAQAKTPLD 372

Query: 374  ALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYS--LVLG 431
             LR+F E F+G +IFSVESEGRREAL ELL RIK+ P++        Q+ EK S  L++G
Sbjct: 373  TLRRFLESFSGPVIFSVESEGRREALQELLARIKILPKAITRL----QEAEKPSHYLMIG 428

Query: 432  SAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHI 491
            ++E GFI      ALICESDLLG+R+   R ++D +   N D +IRNLAEL PGQPVVH+
Sbjct: 429  ASEHGFIDSQRNRALICESDLLGERI--SRPRQDSRRTINPDVLIRNLAELHPGQPVVHL 486

Query: 492  DHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLG 551
            +HG+GRY+GL TLE GG+ +EY+ML Y  +AKLYVPVSSL+LISRY GGA++ A LHKLG
Sbjct: 487  EHGVGRYIGLTTLETGGITAEYLMLAYAGDAKLYVPVSSLHLISRYVGGADDNAPLHKLG 546

Query: 552  GEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQA 611
             + WV+AR+KAAEKVRDVAAELLD+YA+R  K GF F  D EQY +F  +FP+E T DQA
Sbjct: 547  SDVWVRARQKAAEKVRDVAAELLDIYAQRAAKVGFAFKHDWEQYQSFCQSFPYETTPDQA 606

Query: 612  MAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHF 671
             AINAVLSDMCQ  AMDRLVCGDVGFGKTEVAMRAAF+A +N KQVAVLVPTTLLAQQH+
Sbjct: 607  QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQHY 666

Query: 672  ENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLL 731
            +NFRDRFAN P+R+EVLSRF++AKEQ Q+L D  +GKVDIL+GTHKLL SEI++ DLGLL
Sbjct: 667  DNFRDRFANWPVRIEVLSRFRTAKEQAQVLNDTQEGKVDILIGTHKLLQSEIKWRDLGLL 726

Query: 732  IVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAI 791
            IVDEEHRFGVR KE++KAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP RRLA+
Sbjct: 727  IVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPTRRLAV 786

Query: 792  KTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMR 851
            KTFVR+ +D V+REA+LRE++RGGQVY+L+N VE I+K    L +LVPEARI + HGQMR
Sbjct: 787  KTFVREFDDLVVREAILREVLRGGQVYYLYNDVENIEKATRRLAELVPEARIAIGHGQMR 846

Query: 852  ERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRS 911
            ERELE+VMNDF+HQRFN+LVCTTIIETGID+PTANTII++RAD  GLAQLHQLRGRVGRS
Sbjct: 847  ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906

Query: 912  HHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQ 971
            HHQAYA+LLTP PKA+T DA KRLEA+ASLEDLGAGF LATHDLEIRGAGELLGE+QSGQ
Sbjct: 907  HHQAYAWLLTPHPKAMTTDAHKRLEAVASLEDLGAGFALATHDLEIRGAGELLGEDQSGQ 966

Query: 972  IQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSM 1031
            ++S+GF+LYME+LE AV+ALK+G+EP+L+DL   QTE+E+R+P+LLP+++I D+NTRLS 
Sbjct: 967  MESIGFSLYMELLENAVDALKAGREPSLEDLTSSQTEIELRMPSLLPDDFIQDVNTRLSF 1026

Query: 1032 YKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGY 1091
            YK+IAS     EL ELKVELIDRFG LPDA  NLL IA L+L A ++ +R++EA+++GG+
Sbjct: 1027 YKRIASAEKDGELDELKVELIDRFGSLPDAVRNLLDIAALRLTAKKIGIRRVEANDKGGF 1086

Query: 1092 VEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQN 1150
            +EF      +P +++ LLQ +P+   +DGPT+L+F   L ER  RI +V D +     N
Sbjct: 1087 IEFAAKNSADPGWMIGLLQKEPQHWRLDGPTRLRFMRDLTERKIRINWVRDFMNQLLTN 1145