Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECRC62

 Score = 1472 bits (3812), Expect = 0.0
 Identities = 734/1139 (64%), Positives = 902/1139 (79%), Gaps = 5/1139 (0%)

Query: 15   AGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPD 74
            AG+++ +G L GA+ A  +AE+A  H    +L  PD Q AL+L  E+ QF+   V    D
Sbjct: 29   AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLAD 88

Query: 75   WETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKR 134
            WETLPYD+FSPHQDIIS R+S LYQLP++ RG+ IVPV+TL+QR  P  FL  H L++K+
Sbjct: 89   WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 148

Query: 135  GDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTI 194
            G   S D LR QL+++ YRHVDQV   GEYA+RG++LDLFPMGS  P+R+DFFDDEID++
Sbjct: 149  GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 208

Query: 195  RTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGT 254
            R FD D+QR++ E++ I LLPAHEFPT  AAIE FR++WR  FE +R+PE +Y QVSKGT
Sbjct: 209  RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGT 268

Query: 255  WPAGIEYWQPLFF-EHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLR 313
             PAGIEYWQPLFF E    LF Y PAN+ L+  G+LE + ++F  D   R++ R +DP+R
Sbjct: 269  LPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMR 328

Query: 314  PLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLA 373
            PLLPP  LWLR DELF+  K  P+VQL +  +  +A   N   Q LP LAV+ Q K PL 
Sbjct: 329  PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 388

Query: 374  ALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSA 433
            ALR+F E F G ++FSVESEGRREAL ELL RIK+ PQ       A  +     L++G+A
Sbjct: 389  ALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY--LMIGAA 446

Query: 434  ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDH 493
            E GF+     +ALICESDLLG+RV   RR++D +   N D +IRNLAEL  GQPVVH++H
Sbjct: 447  EHGFVDKVRNLALICESDLLGERVA--RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 504

Query: 494  GIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGE 553
            G+GRY G+ TLEAGG+  EY+ML Y N+AKLYVPVSSL+LISRY+GGAEE A LHKLGG+
Sbjct: 505  GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 564

Query: 554  AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMA 613
            AW +AR+KAAEKVRDVAAELLD+YA+R  K GF F  DREQY  F  +FPFE T DQA A
Sbjct: 565  AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 624

Query: 614  INAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFEN 673
            INAVLSDMCQ  AMDRLVCGDVGFGKTEVAMRAAF+A DN KQVAVLVPTTLLAQQH++N
Sbjct: 625  INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 684

Query: 674  FRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIV 733
            FRDRFAN P+R+E++SRF+SAKEQ QIL +VA+GK+DIL+GTHKLL S+++F DLGLLIV
Sbjct: 685  FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 744

Query: 734  DEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKT 793
            DEEHRFGVR KE++KAMRA+VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA+KT
Sbjct: 745  DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 804

Query: 794  FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRER 853
            FVR+ +  V+REA+LREI+RGGQVY+L+N VE I K A  L +LVPEARI + HGQMRER
Sbjct: 805  FVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 864

Query: 854  ELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHH 913
            ELE+VMNDF+HQRFN+LVCTTIIETGID+PTANTII++RAD  GLAQLHQLRGRVGRSHH
Sbjct: 865  ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 924

Query: 914  QAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
            QAYA+LLTP PKA+T DA KRLEAIASLEDLGAGF LATHDLEIRGAGELLGEEQSG ++
Sbjct: 925  QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 984

Query: 974  SVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033
            ++GF+LYME+LE AV+ALK+G+EP+L+DL  +QTEVE+R+P+LLP+++IPD+NTRLS YK
Sbjct: 985  TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1044

Query: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVE 1093
            +IAS  +++EL E+KVELIDRFG LPD A  LL +A L+  A +L +RK+E +E+GG +E
Sbjct: 1045 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKGGVIE 1104

Query: 1094 FYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVL 1152
            F     +NP +L+ LLQ QP+   +DGPT+LKF   L ER  RI++V   ++  ++N +
Sbjct: 1105 FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAI 1163