Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

 Score = 1453 bits (3762), Expect = 0.0
 Identities = 728/1141 (63%), Positives = 901/1141 (78%), Gaps = 5/1141 (0%)

Query: 15   AGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPD 74
            AG+++ +G L GA+ A+  AE+   H    +L  PD Q AL+L  E++QF+   V   PD
Sbjct: 13   AGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFTAQPVMTLPD 72

Query: 75   WETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKR 134
            WETLPYD+FSPHQ+IIS R+S LYQLPSLTRG+ I+PV+TL+Q+  P  FL  H L++K+
Sbjct: 73   WETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPHAFLHGHALMLKK 132

Query: 135  GDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTI 194
            G   S D+LR QLE + YR VDQV   GE+A+RG++LDLFPMGS +PFRIDFFDDEID++
Sbjct: 133  GQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPFRIDFFDDEIDSL 192

Query: 195  RTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGT 254
            R FD D QR++ E+++I LLPA EFPT   AIE FR++WR++FE RR+ E VY QVSKGT
Sbjct: 193  RLFDADTQRTLNEVEQIHLLPAREFPTDKTAIELFRSQWREQFEVRRDAEHVYQQVSKGT 252

Query: 255  WPAGIEYWQPLFFEHS-ETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLR 313
             PAGIEYWQ LFF      LF YLP  + L+  G++++  D+F  D+  R+D R +DP+R
Sbjct: 253  LPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQQRHDSRRVDPMR 312

Query: 314  PLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLA 373
            PLLPPN LWL  D LFA  K  P+VQL S  +  +A  +N   QPLP LAV+HQNK PL 
Sbjct: 313  PLLPPNALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINLGYQPLPDLAVQHQNKSPLD 372

Query: 374  ALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSA 433
            ALR+F EQF G+I+FSVESEGRRE L E+L RIKL P      SL    +    L++G++
Sbjct: 373  ALRRFVEQFGGQIVFSVESEGRRETLQEVLSRIKLSPAPVK--SLEQTASPGCYLMIGAS 430

Query: 434  ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDH 493
            E GFI    Q  LICESDLLG+RV   RR++D +   N+D +IRNLAEL+PGQPVVH++H
Sbjct: 431  EHGFIDTLRQRTLICESDLLGERV--SRRRQDSRRTINTDTLIRNLAELRPGQPVVHLEH 488

Query: 494  GIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGE 553
            G+GRY GL TLEAGG+ +EY++L Y  E KLYVPVSSL+LISRY+GGAEE+A LHKLGG+
Sbjct: 489  GVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESAPLHKLGGD 548

Query: 554  AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMA 613
            AWV+AR+KAAEKVRDVAAELLDVYA+R    GF F  DREQY  F   FPF+ T DQA A
Sbjct: 549  AWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTTPDQAQA 608

Query: 614  INAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFEN 673
            INAVLSDMC+  AMDRLVCGDVGFGKTEVAMRAAF+A +N KQVAVLVPTTLLAQQHF+N
Sbjct: 609  INAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFDN 668

Query: 674  FRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIV 733
            FRDRFAN P+R+E+LSRF+S KEQ Q+L+   +GKVDIL+GTHKLL S++ + DLGLLIV
Sbjct: 669  FRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYWLDLGLLIV 728

Query: 734  DEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKT 793
            DEEHRFGVR KE++KAMRA+VDILTLTATPIPRTLNMAMSG+RDLSIIATPPARRLA+KT
Sbjct: 729  DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVKT 788

Query: 794  FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRER 853
            FVR+ +  V+REA+LREI+RGGQVY+L+N VE I+K A  L +LVPEARI + HGQMRER
Sbjct: 789  FVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAIGHGQMRER 848

Query: 854  ELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHH 913
            +LE+VMNDF+HQRFN+LVCTTIIETGID+P+ANTII++RAD  GLAQLHQLRGRVGRSHH
Sbjct: 849  DLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHH 908

Query: 914  QAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
            QAYAYLLTP PKA++ DA KRLEAIASLEDLGAGF LATHDLEIRGAGELLGE QSGQ++
Sbjct: 909  QAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSGQME 968

Query: 974  SVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033
            SVGF+LYM++LE AVE+LK+G+EP+L+DL+  QT+VE+RLPALLP+++IPD+NTRLS YK
Sbjct: 969  SVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPALLPDDFIPDVNTRLSFYK 1028

Query: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVE 1093
            +IAS  + +EL +LK ELIDRFGKLPDAA +LL +A L+  A  L +++IE +++GG+VE
Sbjct: 1029 RIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEGNDKGGFVE 1088

Query: 1094 FYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVLP 1153
            F  +  ++P  L+ LLQ  PK+  +DGP++LKF   L     R+ F+  +L+   Q+   
Sbjct: 1089 FSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGGYPQRLTFITTLLEEMAQHTCA 1148

Query: 1154 A 1154
            A
Sbjct: 1149 A 1149