Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  558 bits (1437), Expect = e-162
 Identities = 298/703 (42%), Positives = 456/703 (64%), Gaps = 18/703 (2%)

Query: 393  EGRREALLELL--QRIKLRPQSQNDFSLACQQTEKYSLVLGSAERGFIYGDNQVALICES 450
            +  R+ LL ++  +  K   + QN F      T K   +  S   GF+  D+   + C +
Sbjct: 350  DNERKGLLNIICSESEKQVERLQNIFQ-ELDPTLKIQSLPVSIREGFV--DHSTMIACYT 406

Query: 451  DLLGDRVIQR-RRKKDRKNVTNSDAV-IRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGG 508
            D    ++ +R  R K  K  + + A+ ++ L  L+ G  VVH+D+G+GR+ GL+ +E   
Sbjct: 407  D---HQIFERYHRYKSHKKASKTKALTLKELKTLQAGDYVVHVDYGVGRFAGLEKVEVND 463

Query: 509  MVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRD 568
               E V L ++++  LYV + SL+ IS+YSG       + KLG   W   ++K   KV+D
Sbjct: 464  NFQEAVRLIFRDDDLLYVNIHSLHKISKYSGQEGTLPTMSKLGSPEWENKKKKVKRKVKD 523

Query: 569  VAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMD 628
            +A +L+ +YAKR    G ++  D       +++F FE+T DQA+A   V +DM +   MD
Sbjct: 524  IAKDLIALYAKRRNASGHQYAPDSVLQVELESSFIFEDTPDQAVATGDVKADMEKPYPMD 583

Query: 629  RLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVL 688
            RLVCGDVGFGKTEVA+RAAF A ++ KQVAVLVPTT+LA QH+  F++R    P++V+ +
Sbjct: 584  RLVCGDVGFGKTEVAIRAAFKAINDRKQVAVLVPTTILAMQHYRTFKERLEGFPVKVDYI 643

Query: 689  SRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVK 748
            +RF++ K+ K+I + V  G++DILVGTH++++ +++F DLGLLI+DEE +FGV+ K+++K
Sbjct: 644  NRFRTTKQVKEITKQVTSGEIDILVGTHRIVNKDVQFKDLGLLIIDEEQKFGVKVKDQLK 703

Query: 749  AMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVL 808
             +R +VD+LTLTATPIPRTL+ ++ G RDLS+IATPP  R  + T +   E+ VIR+AV 
Sbjct: 704  ELRVNVDVLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTEIHTFEEEVIRDAVS 763

Query: 809  REIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFN 868
            RE+ RGGQV+F+HN+V  ID +A  + +LVP+A+I  AHGQM  ++LEK+M  F    F+
Sbjct: 764  RELQRGGQVFFVHNRVGEIDSIANLIMRLVPDAKIAGAHGQMDGKQLEKIMVKFIEGEFD 823

Query: 869  LLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAIT 928
            +LV T IIE+G+D+P ANTII++RA   GL+ LHQ+RGRVGRS+ +AY YLLT P   +T
Sbjct: 824  VLVSTNIIESGLDIPNANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTSPMSGLT 883

Query: 929  KDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAV 988
             +A KRL+ +    DLG GF +A  DL+IRGAG LLG EQSG I  +GF +Y ++L++AV
Sbjct: 884  AEARKRLQTLEEFSDLGDGFKVAMRDLDIRGAGNLLGAEQSGFITDLGFEMYHKILDEAV 943

Query: 989  EALKSGKEPALDDL-LREQTEV-------EMRLPALLPEEYIPDINTRLSMYKQIASVAS 1040
            + LK  +  +L ++ L+E+ +V       E  +  L+PE+Y+ +I+ RL++Y ++ ++ +
Sbjct: 944  QELKENEFASLFEVDLKEKVKVLVQDCVIETDMELLIPEDYVSNISERLNLYSKLDNIKT 1003

Query: 1041 KDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKI 1083
            ++ L +    + DRFG +P    +L+    L+  A  L   K+
Sbjct: 1004 EEALTKFAHAVSDRFGPIPPVVEDLMETVRLRWLAEGLGFEKL 1046



 Score = 70.9 bits (172), Expect = 6e-16
 Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 3/203 (1%)

Query: 16  GDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVA-LFPD 74
           G   A   + G+   + +A   N   S  L+   D + A  L  ++          +FP 
Sbjct: 28  GSNFAFKGISGSMDMVLLATFINLRHSSHLIIAHDKEEAAYLASDLSSLLDRVTPHIFPS 87

Query: 75  WETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPV--STLLQRQSPRDFLLQHTLIV 132
               PY +       +  R   L ++ S    + I+      L ++   +  L ++T   
Sbjct: 88  SYKRPYQHEEVDNANVLMRAEILNKVLSSDTKMEIIVSYPEALYEKVINKKSLQENTFTA 147

Query: 133 KRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEID 192
           K G+   ++ +   L    +   D V+ PG++A RG I+D+F   +  P+RI+ F  EI+
Sbjct: 148 KVGEKVDVEFITELLSTYDFEKTDFVYEPGQFAIRGGIIDVFSFANEYPYRIELFGKEIE 207

Query: 193 TIRTFDPDNQRSIAEMDEIRLLP 215
           +IRTFD ++Q S   +D I ++P
Sbjct: 208 SIRTFDTESQLSEESLDHISIIP 230