Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1149 a.a., transcription-repair coupling factor from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  728 bits (1878), Expect = 0.0
 Identities = 437/1099 (39%), Positives = 633/1099 (57%), Gaps = 32/1099 (2%)

Query: 30   ALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHS-EVALFPDWETLPYDNFSPHQD 88
            AL +AE   A     L    D Q +   +   + FS   EV  +P W+ LPYD  SP   
Sbjct: 22   ALIVAERIKAGGGVGLFVARDFQRSGSFVQAFQFFSKDIEVLDYPAWDCLPYDRLSPTAG 81

Query: 89   IISDRISRLYQLPSLTRG----ITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDKLR 144
            I + R++ L +L     G    + +  VS  +QR  P+    Q     K G    +  L 
Sbjct: 82   IAAQRMATLTRLAMRKPGDAPVLVVTTVSAAMQRTPPKSVTTQAGFETKVGRDLDIQALE 141

Query: 145  LQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQRS 204
                 + Y     V   GE+A RG ++D++P G  +P R+D F  E+++IRTFDP+ QRS
Sbjct: 142  RYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPVRLDMFGSELESIRTFDPETQRS 201

Query: 205  IAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYWQP 264
              +M  + L P  E    AAAI  FR  +   F A  + + +Y+ +S+G    G+E W P
Sbjct: 202  TGQMTFVSLAPVSEALLDAAAISRFRTGYLNLFGAPGD-DPLYATISEGARRQGMEQWLP 260

Query: 265  LFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQR-------NIDPLRPLLP 317
            LF+E  ++LFDYLP ++ + +  ++E A  +    V   YD R               LP
Sbjct: 261  LFYETLDSLFDYLPDDAAIFLDNQVETARAERWDLVADAYDARAEAAKAKGQASANRALP 320

Query: 318  PNELWLRKDELFAHF--KTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAAL 375
            P  L+L   +       + + +    S+  E   GR+          A +  N     A 
Sbjct: 321  PKRLYLDAGDWNQALAGRVVRRFTPFSTGGEDAGGRLGRTFAA--ERAQDSVNLFEAVAA 378

Query: 376  RQFSEQFTGK-IIFSVESEGRREALLELLQRIKL-RPQSQNDFS-LACQQTEKYSLVLGS 432
               + +  GK ++F+  +EG  E L  +L    L    +  D++ +     + Y   +  
Sbjct: 379  HAAALKADGKRVLFASWTEGSSERLATMLADHGLDHIVAVRDWADVQAAPKDLYLRGVLP 438

Query: 433  AERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHID 492
             E GF+   + VA+I E+D+LGDR+ + R+K+   N       +   + L  G  VVH+D
Sbjct: 439  VEHGFV--TDAVAVISETDILGDRLARPRKKRRASNF------LAEASALTTGDLVVHLD 490

Query: 493  HGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGG 552
            HGIGRY GL+TLE      + + L Y  E+KLY+PV +++L++RY G   E  QL KLGG
Sbjct: 491  HGIGRYEGLKTLEIQQAPHDCLELFYAGESKLYLPVENIDLLTRY-GSDSEGVQLDKLGG 549

Query: 553  EAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAM 612
              W   + KA E++R +A  L+ + AKR ++           +A F A FP+EETDDQ  
Sbjct: 550  AGWQARKAKAKERLRAMAEGLIALAAKRALRETDAVTPPPGLFAEFCARFPYEETDDQLN 609

Query: 613  AINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFE 672
            AI  VL D+ +   MDRL+CGDVGFGKTEVA+RAAFV    G+QVA++ PTTLLA+QH++
Sbjct: 610  AIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAPTTLLARQHYK 669

Query: 673  NFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLI 732
             F +RFA  P++V  LSR   +KE  +    + DG V+I+VGTH +LS ++ F DLGL+I
Sbjct: 670  TFTERFAGWPVKVRQLSRMVGSKEATETRAGLKDGSVEIVVGTHAVLSEQVGFRDLGLVI 729

Query: 733  VDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIK 792
            VDEE  FGV+ KEK+K +RADV +LTLTATPIPRTL MA+SG+R++SIIATPP  RLA++
Sbjct: 730  VDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAVR 789

Query: 793  TFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRE 852
            T+V   +  ++REA+LRE  RGGQ Y++  +++ +  +   L + VPE +  V HGQM  
Sbjct: 790  TYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPAIEKFLREQVPEVKFVVGHGQMSA 849

Query: 853  RELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSH 912
             +LE+VM+ FY   +++LV TTI+E+G+D+PTANT+I+ RAD  GLAQL+Q+RGRVGRS 
Sbjct: 850  TQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLIVHRADMFGLAQLYQIRGRVGRSK 909

Query: 913  HQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQI 972
             +A+AYL T   K +T  A +RL+ + SL++LGAGF LA+HDL+ RG G LLG+EQSG I
Sbjct: 910  ARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLLGDEQSGHI 969

Query: 973  QSVGFTLYMEMLEQAVEALK-SGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSM 1031
            + VG  LY +MLE AV  L+  G+  A+D        + +    L+PE+Y+PD+N RLS+
Sbjct: 970  REVGVELYQQMLEDAVAELREKGEGQAVD--RGWSPSINVGASVLIPEDYVPDLNVRLSL 1027

Query: 1032 YKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGY 1091
            Y++++     ++   L  ELIDRFG LPD A  LL I  +K N  +  + KI+   RG  
Sbjct: 1028 YRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKSNCRKACIEKIDIGPRGAV 1087

Query: 1092 VEFYPNADINPVFLVKLLQ 1110
            +    N+  NP  LV L+Q
Sbjct: 1088 LTLRDNSFPNPAGLVGLIQ 1106