Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1101 a.a., helicase-related protein from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  505 bits (1301), Expect = e-147
 Identities = 348/1050 (33%), Positives = 545/1050 (51%), Gaps = 75/1050 (7%)

Query: 27   ASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQF-SHSEVALFPDWETLPYDNFSP 85
            A++A  +AE+    +   +      + A ++   +      +EV + P W+ LPYD  +P
Sbjct: 37   AAVAAGLAEMKTKRSQAVVFIATSERRADEIAAALSPMVKDAEVLVLPPWDCLPYDRAAP 96

Query: 86   HQDIISDRISRLYQLPSLT-RGITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDKLR 144
             ++ +  R++ L  L   +   + +V     + +++P    ++  L +  G+      L 
Sbjct: 97   SRESMGRRMAVLAALNEASVMPVFLVASPDAIVQRTPSLERIKARLSLAAGEALDRKALE 156

Query: 145  LQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFD-DEIDTIRTFDPDNQR 203
              L+++ Y   ++V  PGEYA  G+++D+FP  S+ P+RI   + D I  I  FDP +QR
Sbjct: 157  SFLKDTGYAADERVDEPGEYALLGAVVDVFPPASATPYRIALDEADRIIEIHAFDPVSQR 216

Query: 204  SIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYWQ 263
              AE++ I L PA E+                   + R PE   +   + T P+      
Sbjct: 217  RGAEIETICLTPAAEW-------------------SDRSPEDDEAD-HQDTGPS------ 250

Query: 264  PLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRN--IDPLRPLLPPNEL 321
             +  E S TLFD+L     L  VG +E   ++    V   YD R    +  RP  P    
Sbjct: 251  -IDAETSTTLFDFLVKPMILTDVG-VEDRFERIRGHVAEAYDTRLRFSEGARPAKP---- 304

Query: 322  WLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAALRQF--S 379
                D L+   K + Q    + P+ +          P P  A+E   K P  AL+QF   
Sbjct: 305  ----DTLYLTEKDVRQALKGAKPLSVEGWA------PTPAFALE---KSPGRALKQFIAE 351

Query: 380  EQFTGKIIFSVESEGRREALLELLQRIKL-RPQSQNDFS-LACQQTEKYSLVLGSAERGF 437
             +  G  I           +L +L+R  +  P +   +S +A  Q  + ++V    + GF
Sbjct: 352  RREAGDRIVLTGLPHEHRIILRVLRRHDIDTPVTLEGWSAIAPLQPGQIAVVTADLDTGF 411

Query: 438  IYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDHGIGR 497
                  + ++  SD+ G R+        R +   +DA      EL+    V+H DHG+G 
Sbjct: 412  RQSATGLVVLTPSDIFGGRIA-------RGSGDTNDAFEET--ELRLDDVVIHEDHGLGV 462

Query: 498  YLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGEAWVK 557
               L+ + A G+  + + +EY     +  P+     I RY G   +A  L +L  + W+K
Sbjct: 463  LKALERVAADGVERDVLRIEYHGGGTILAPIEEFGKIWRY-GSEPDAVSLDRLNTQGWLK 521

Query: 558  ARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAV 617
             R K + ++ + AA L      R           R+  A F A F F ET DQA AI AV
Sbjct: 522  RRAKVSAQIDEAAAALSARAEARAALRTEPITAPRQALARFAAGFAFPETADQARAIEAV 581

Query: 618  LSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDR 677
            LSD+   K M+RLVCGDVGFGKTEVA+RAA      GKQV V+ PTT+LA+QHFE F+ R
Sbjct: 582  LSDLGSGKPMNRLVCGDVGFGKTEVALRAAAAVALAGKQVIVVAPTTVLARQHFEVFKRR 641

Query: 678  FANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEH 737
            F +  ++V  LSR   + E + +   +ADG + ++VGT  L S  + F+ LGL+I+DEEH
Sbjct: 642  FKDTDVQVGHLSRAADSAEARAVKTGLADGSMRVVVGTQALASEGLAFSSLGLVIIDEEH 701

Query: 738  RFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQ 797
            RFG + K  + A +A   +L+++ATPIPRTL  AM G++D+S+IA+PPARR  I+TF+  
Sbjct: 702  RFGAQMKSAL-AEKAP-HLLSMSATPIPRTLQSAMVGIQDVSLIASPPARRRPIRTFMTP 759

Query: 798  SEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELEK 857
             +   +R +++RE  RGGQ + +  ++E ++ +A  L+ L PE  +  AHG M    ++ 
Sbjct: 760  FDAGAVRLSLMREKARGGQSFVVVPRIEDMEPLAERLKTLTPELSVVSAHGDMSPSAIDD 819

Query: 858  VMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYA 917
             M+ F     ++L+ T IIETG+DVP ANT+++ R D  GLAQLHQLRGRVGR   Q + 
Sbjct: 820  AMSRFSDGEGDVLLATNIIETGLDVPRANTMLIWRPDRFGLAQLHQLRGRVGRGRRQGFT 879

Query: 918  YLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGF 977
            YLL+ P   +      RL+ + +L+ LGAGF ++  DL++RG G+L+GEEQ+G ++ +G 
Sbjct: 880  YLLSDPEAPMAAATEARLQTLEALDRLGAGFAISGRDLDLRGGGDLVGEEQAGHVRLIGS 939

Query: 978  TLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPAL--LPEEYIPDINTRLSMYKQI 1035
             LY  +L +A+ A+K    P       +Q    + + A   LP +YIPD   R+++Y ++
Sbjct: 940  ALYQAVLARALAAVKGDPNP-------DQASPSLNVGATGHLPADYIPDETVRINLYARL 992

Query: 1036 ASVASKDELAELKVELIDRFGKLPDAALNL 1065
            A   + +++  L+ E  DRFG LPD A +L
Sbjct: 993  ARATTAEDVDALRDEAEDRFGSLPDPAEDL 1022