Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1137 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

 Score =  493 bits (1268), Expect = e-143
 Identities = 360/1078 (33%), Positives = 534/1078 (49%), Gaps = 71/1078 (6%)

Query: 29   LALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPDWETLPYDNFSPHQD 88
            LA+ +A LA       LLA  D +         + F   +  L P  ET   D  +P + 
Sbjct: 34   LAVRLAALARRPGGALLLARSDARATRLARLVGDLFPDLDTILLPIDETAAGDRAAPSRA 93

Query: 89   IISDRISRLYQL-----PSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDKL 143
            ++  R + L +L     P+  R + +      LQR  P          + RG  +     
Sbjct: 94   VLGRRAAGLMRLAERGEPASGR-LVVASADLALQRVPPPQAWAGGHFRLTRGMAYDEAAW 152

Query: 144  RLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQR 203
            R     + Y   D+V  PGE A RG+++++FP     P R D  D  +  +R +DP +QR
Sbjct: 153  RGWFARTGYVMDDRVDEPGEVAIRGAVVEVFPGHCDRPVRCDIADGVVRDLRLYDPVSQR 212

Query: 204  SIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYWQ 263
            S+  +DE+ L P  +       ++       +   A   PE +  ++ +G  P   +   
Sbjct: 213  SVESIDELALGPVTDLIVGPEMLDRLAASLARLGSAL--PEGLRRELEEGRRPYAFDLQL 270

Query: 264  PLFFEHSETLFDYLPANSQLLVVGELEK----AIDQFLTDVDYRYDQRNIDPLRPLLPPN 319
            P  F+    L D LP    +L  G  ++    A D     +D R   R  DP    +PP 
Sbjct: 271  PNVFDDCPLLLDLLPEALVVLDAGARDRIEARADDLAEAGIDRRI--RRDDPCLLPVPPL 328

Query: 320  ELWL----RKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAAL 375
            E  L      DE  A  +TL  V++T+ P+                  VE    E     
Sbjct: 329  ERRLIDADALDEKLAA-RTLLPVEVTNGPV------------------VEAVRTERTLLR 369

Query: 376  RQFSEQFTGKIIFSVESEGRREA--LLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSA 433
            R       G+ +      G  EA  L E +     RP  + D             VL   
Sbjct: 370  RSVGLVGEGRAVLLAARSGAGEADRLAERMSSALGRPVPRLDRWPEPPLAAGDCAVLALR 429

Query: 434  ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNL---AELKPGQPVVH 490
              G    D    L+             R  ++R      +A +R     +EL  G  VVH
Sbjct: 430  SAGGFTCDGMTVLVAP-----------RHAEER----GGEAQVRPPLAPSELSTGDFVVH 474

Query: 491  IDHGIGRYLGLQTLEAGGM---VSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQL 547
            +D+GIGR +GL+T+ +G      +++++L+Y ++ +L VP +  + + R+ G A+  A+L
Sbjct: 475  LDYGIGRLIGLETIASGDGEDDTADFLVLDYAHDDRLLVPTADFDRLWRH-GSADTGAKL 533

Query: 548  HKLGGEAWVKARRKAAEKVRDVAAELLDVYAKR--EIKPGFKFHLDREQYATFKATFPFE 605
              L    W++ R     ++ + A  +L    +R  E  P     +DR +   F A F F+
Sbjct: 534  DSLKNAHWLERRAVLEAEIGETAKGILREARRRARESAPVIDPPVDRMR--RFGARFGFD 591

Query: 606  ETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTL 665
             T+ Q  AI  VL  M Q + MD LVC DVG+GKTEVA+RAA      G QVAV+ PT++
Sbjct: 592  PTEGQRRAIQTVLDAMRQGQPMDHLVCADVGYGKTEVALRAAAAVAFAGHQVAVMAPTSV 651

Query: 666  LAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRF 725
            LA+QH E FR RFA   IR+E L+   +  E  ++   +ADG VDI++GTH LLS ++RF
Sbjct: 652  LARQHLEVFRRRFAGFGIRLEPLTGAMTKTESDRVRAGLADGSVDIVIGTHALLSKDVRF 711

Query: 726  ADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 785
              LGL++VDEE RFG  QK+ +K     V  L L+ATPIPRTL  A++G+R LSII TPP
Sbjct: 712  QRLGLMVVDEEQRFGATQKQALKRRIKGVHSLALSATPIPRTLQGALAGLRGLSIIDTPP 771

Query: 786  ARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITV 845
            ARR  ++T V   + +  R A+LRE+ RGGQV+ +  ++  + ++   +  LVP A I V
Sbjct: 772  ARRRPVRTAVTPRDPTTARAALLRELGRGGQVFCVTPRIADLGELEEWIRGLVPSACIAV 831

Query: 846  AHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLR 905
            AHG++    L+  +  F     ++L+ T IIE+GID+P ANT+++ R D  GL QLHQLR
Sbjct: 832  AHGRLGAAALDDAVMGFVDGESDILLATPIIESGIDIPRANTLLLFRPDLFGLGQLHQLR 891

Query: 906  GRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLG 965
            GRVGR   Q YAYLLT P   + + A +RL ++  +E LG GF L+  DL+ RGAG+LLG
Sbjct: 892  GRVGRGAVQGYAYLLTDPDHPLEERAARRLGSLEVIESLGGGFVLSMLDLDQRGAGDLLG 951

Query: 966  EEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDI 1025
            E+QSG +++VG  LY  +L  A+ AL+   +   D       EV + +P  +P  YIP+ 
Sbjct: 952  EDQSGHLRAVGTELYQRILADALRALRRQPDARWD------PEVTVAVPHGIPSAYIPEE 1005

Query: 1026 NTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKI 1083
              R+ ++++IA      EL  L+ E+ DRFG LP     LLAIA L+     L +  +
Sbjct: 1006 ELRIGLHRRIARTREAGELDALREEMEDRFGPLPVPMERLLAIAGLRCRCRALGIASL 1063