Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1165 a.a., Transcription-repair-coupling factor from Alteromonas macleodii MIT1002

 Score = 1287 bits (3330), Expect = 0.0
 Identities = 649/1141 (56%), Positives = 847/1141 (74%), Gaps = 11/1141 (0%)

Query: 17   DKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQF-----SHSEVAL 71
            D K  G L G+S AL I++  + +    +L   D  +A+KL  E+  F      H+ + L
Sbjct: 21   DHKHWGQLQGSSAALCISQALSQYKGPIVLITADTPSAMKLEKEIAFFLSDNTKHTPITL 80

Query: 72   FPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLI 131
            FPDWETLPYD+FSPHQDI+S R+  L++      GI IVPV+TL+QR +P D+L ++ L+
Sbjct: 81   FPDWETLPYDSFSPHQDIVSQRLETLFRFTQQGEGIFIVPVNTLMQRLAPTDYLAKYLLM 140

Query: 132  VKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEI 191
            + +GD    D+ R  LE + Y HV QV    E++ RGSI+DLFPMGS  PFRID FDDEI
Sbjct: 141  LNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSIIDLFPMGSDQPFRIDLFDDEI 200

Query: 192  DTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVS 251
            D+IR FD + QRS   ++EIRLLPA EFPT   AI  FR ++ ++F+A    ESV+SQVS
Sbjct: 201  DSIRYFDTETQRSGEAVNEIRLLPAREFPTDKEAITLFRQQFLEKFDANNASESVFSQVS 260

Query: 252  KGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDP 311
            KGT P+G+EY+ PLFFE + TLFDYL   S LL+ G+++ A + F  DV  RY+Q   + 
Sbjct: 261  KGTMPSGVEYYLPLFFEKTATLFDYLHPKSLLLLHGDVQDASEFFWADVQERYEQYRYNL 320

Query: 312  LRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEP 371
             RPLL P+EL+L  +ELF   K  P+  L+S  +E ++G  N Q + L  +A+  Q K P
Sbjct: 321  ARPLLAPDELFLPINELFGAIKQWPRASLSSKVLEEKSGTSNLQCEKLDDIAINSQKKVP 380

Query: 372  LAALRQFSEQFT---GKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSL 428
               L +   Q T    K++F  E++GRRE LL +L +  ++P+  + FS      +   +
Sbjct: 381  AERLIKTVNQATDNGAKVLFCAETQGRREGLLTVLAKAGIKPKIVDSFSDFIASHDNIGI 440

Query: 429  VLGSAERGFIYG--DNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQ 486
             +G  +  F +   + ++  I E++LLG +V QRR + D++  T+  A+IRNLAEL  GQ
Sbjct: 441  TVGMVDNSFRWQTQEGELLFITETELLGQKVSQRRLR-DKRTATDESAIIRNLAELSIGQ 499

Query: 487  PVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQ 546
            PVVH+DHG+GRYLGLQTL+AGG+ +EY+ +EY  ++KLYVPV+SL+LISRY+GG  ++A 
Sbjct: 500  PVVHLDHGVGRYLGLQTLDAGGVATEYLCIEYAKQSKLYVPVASLHLISRYTGGDADSAP 559

Query: 547  LHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEE 606
            +  LG +AW KA++KAAEKVRDVAAELLDVYA+R  KPGF + ++ + Y  F  +FPFEE
Sbjct: 560  VSALGSDAWTKAKQKAAEKVRDVAAELLDVYARRAAKPGFAYKINWDDYQAFSDSFPFEE 619

Query: 607  TDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLL 666
            T DQA AI AV+ DM    AMDRLVCGDVGFGKTEVAMRAAF+A + GKQVA+LVPTTLL
Sbjct: 620  TPDQAQAIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAAFLAANAGKQVAILVPTTLL 679

Query: 667  AQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFA 726
            AQQH+ENF+DRFA  P  +EV+SRF S K QK +++ + +GKVDI+VGTHKLLSS+I + 
Sbjct: 680  AQQHYENFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEGKVDIVVGTHKLLSSDINYK 739

Query: 727  DLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 786
            DLGL+I+DEEHRFGVRQKEK+K++RADVDILTLTATPIPRTLNMA+SGMRDLSIIAT PA
Sbjct: 740  DLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRTLNMALSGMRDLSIIATAPA 799

Query: 787  RRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVA 846
            RRL+IKTFV+Q   +VIREA++REI+RGGQVYFLHN+V++I + A ++ ++VPEARI V 
Sbjct: 800  RRLSIKTFVQQRNKAVIREAIMREILRGGQVYFLHNEVDSIARTAEEIAEIVPEARIAVG 859

Query: 847  HGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRG 906
            HGQMRERELE VM+DFYHQR+N+LVCTTIIETGIDVP+ANTIIMDRAD LGLAQLHQLRG
Sbjct: 860  HGQMRERELEGVMSDFYHQRYNVLVCTTIIETGIDVPSANTIIMDRADHLGLAQLHQLRG 919

Query: 907  RVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGE 966
            RVGRSHHQAYAYLLTP PK +TKDAVKRLEAI+ LEDLGAGF LATHDLEIRGAGELLG+
Sbjct: 920  RVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQLEDLGAGFALATHDLEIRGAGELLGD 979

Query: 967  EQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDIN 1026
            +QSGQI S+GF+LYM+ML++AV ALK G+EP+LDD     TEVE+R+PALLPE+YI D+N
Sbjct: 980  DQSGQIASIGFSLYMDMLDKAVNALKEGREPSLDDATSGHTEVELRIPALLPEDYIADVN 1039

Query: 1027 TRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAH 1086
            TRLS+YK++AS  S+D++ E +VE IDRFG LP+ A NL+ +AE+KL A  L + K++  
Sbjct: 1040 TRLSLYKRLASCTSQDDIDEFQVECIDRFGLLPEPAKNLIEVAEIKLKAQALGILKVDLS 1099

Query: 1087 ERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKN 1146
             +GG +EF     +NP +++ L+Q++P     +G  KL+          RI F++D++ +
Sbjct: 1100 AQGGTIEFKETTKVNPGYIISLVQTKPNTFKFEGSQKLRLVKKTETAKERIAFISDIIAD 1159

Query: 1147 F 1147
            F
Sbjct: 1160 F 1160