Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 690 a.a., ATP-dependent DNA helicase RecG from Alteromonas macleodii MIT1002

 Score =  236 bits (601), Expect = 6e-66
 Identities = 152/415 (36%), Positives = 220/415 (53%), Gaps = 19/415 (4%)

Query: 573 LLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVC 632
           +L V    + +PG    +++       A  PF  T  QA  +  +  DM  A+ M RLV 
Sbjct: 233 VLKVRKLSDAQPGIPIKVNQPLIDKMLAQLPFSPTGAQARVVQDIQKDMQHARPMMRLVQ 292

Query: 633 GDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFK 692
           GDVG GKT VA  AA  A   G QVA++ PT LLA+QH  NFR     L I V  L+   
Sbjct: 293 GDVGSGKTLVAALAALSAIGAGHQVALMAPTELLAEQHANNFRGWLEPLGIEVGWLAGKL 352

Query: 693 SAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQ----KEKVK 748
             K + ++L  +  G + +LVGTH +    + +  L L+IVDE+HRFGV Q    ++K +
Sbjct: 353 KGKARNEVLARLEAGDIQMLVGTHAIFQESVNYQQLALVIVDEQHRFGVHQRLALRDKGE 412

Query: 749 AMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFV-----RQSEDSVI 803
                   L +TATPIPRTL M      D S+I   P  R  ++T V     R      +
Sbjct: 413 QQGRYPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVQTVVLPDTRRADVIERV 472

Query: 804 REAVLREIMRGGQVYFLHNQVETIDKVAAD-----LEKLVPEARITVAHGQMRERELEKV 858
           R+A      +   V  L ++ E ++  AA+     L   +P+  + + HG+++  E  +V
Sbjct: 473 RQACKENGRQAYWVCTLIDESEVLECQAAEDAAVTLRTALPDLHVGLVHGRLKPAEKAQV 532

Query: 859 MNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAY 918
           M DF   + +LLV TT+IE G+DVP A+ +I++  + LGLAQLHQLRGRVGR   ++   
Sbjct: 533 MADFKDGKLDLLVATTVIEVGVDVPNASIMIIENPERLGLAQLHQLRGRVGRGAVESQCV 592

Query: 919 LLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
           L+   P  ++K A +RL  +    D   GF +A  DLEIRG GE +G +Q+G  +
Sbjct: 593 LMYQSP--LSKTATQRLGVLRESND---GFYIAQRDLEIRGPGEFMGTKQTGMAE 642