Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 701 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

 Score =  228 bits (582), Expect = 1e-63
 Identities = 145/383 (37%), Positives = 210/383 (54%), Gaps = 13/383 (3%)

Query: 596 ATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGK 655
           A   +  PF  T  Q+ A+  +L+DM     M RL+ GDVG GKT VA+ A   A + G 
Sbjct: 264 AKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVEAGG 323

Query: 656 QVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGT 715
           Q  ++ PT +LA+QHF         + + VEVL+     KE+++I + VA G+  I++GT
Sbjct: 324 QAVLMAPTEILARQHFATISKLAKAVGLTVEVLTGRTKGKERREIEERVASGEAQIVIGT 383

Query: 716 HKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGM 775
           H L    + + +L L +VDE+HRFGV Q+ ++ A      +L +TATPIPRTL +A  G 
Sbjct: 384 HALFQDSVSYKNLVLAVVDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGD 443

Query: 776 RDLSIIATPPARRLAIKTFVRQSE---DSVIR-EAVLREIMRGGQVYFLHNQVETIDKVA 831
            D+S +   PA R  I+T    +E   D V R  A L++  +   +  L  + E  D ++
Sbjct: 444 MDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAALKDGKKAYWICPLVEETEESDLMS 503

Query: 832 ADLEKLVPE----ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887
           A+    V      A I + HG+M   E +  M  F      LLV TT++E G+DVP A  
Sbjct: 504 AEERHAVLSQMLGANIGLIHGRMNGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPDATI 563

Query: 888 IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947
           ++++ A+  GLAQLHQLRGRVGR    +   LL   P  ++++   RL  +   ED   G
Sbjct: 564 MVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP--LSENGRARLSILRDSED---G 618

Query: 948 FTLATHDLEIRGAGELLGEEQSG 970
           F +A  DL++RG GELLG  QSG
Sbjct: 619 FLIAEEDLKLRGEGELLGTRQSG 641