Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1165 a.a., transcription-repair coupling factor from Agrobacterium fabrum C58

 Score =  737 bits (1902), Expect = 0.0
 Identities = 447/1122 (39%), Positives = 654/1122 (58%), Gaps = 46/1122 (4%)

Query: 21   IGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALF--PDWETL 78
            IGN+     AL +A++A A TS     + D Q    L  ++  F   ++ +   P W+ L
Sbjct: 19   IGNVPSGMEALLLADMARAGTS-VAYVMSDGQRVADL-EQILGFVAPDIPVLTLPAWDCL 76

Query: 79   PYDNFSPHQDIISDRISRLYQLPSLTR----GITIVPVSTLLQRQSPRDFLLQHTLIVKR 134
            PYD  SP  D  + R++ L  L +  +     + +V V+ +LQ+ +PRD +       + 
Sbjct: 77   PYDRVSPSADTSARRLAALAGLINHAKKPHPAVVLVTVNAMLQKMAPRDVIESLGFSARP 136

Query: 135  GDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTI 194
            G+   ++ +  +LE + +  V  V   GE+A RG ILD+F  G+ +P R+DFF D +++I
Sbjct: 137  GNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGTEEPVRLDFFGDTLESI 196

Query: 195  RTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGT 254
            RTFDP +QR+IA+   + L P  E   T   I  FR  +   F A    +++Y  VS+G 
Sbjct: 197  RTFDPASQRTIAQARSLDLNPMSEVTLTPDTIGRFRKNYLSLFGAATRDDALYQAVSEGR 256

Query: 255  WPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNID---- 310
              AG+E+W PLF+E  ET FDYL     +      E A ++    +DY Y+ R       
Sbjct: 257  RYAGMEHWLPLFYEQLETAFDYLKGFRIVTDHTAKEAAKERSKLVLDY-YEARRASGETK 315

Query: 311  ------PLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQ------- 357
                  P +P+  P +++L      A   ++  V+LT        GR  A +        
Sbjct: 316  GSTQGAPYKPV-SPGQIYLDGKSFEAALASVNAVRLTPFNEHDSEGRPVATLDAHVGPRW 374

Query: 358  ---PLPVLAVEHQNKEPLAALRQFSEQFTG-KIIFSVESEGRREALLELLQRI---KLRP 410
               P    + E  N   LA       +  G K++ +  SEG  + LL++L      K++P
Sbjct: 375  ARPPTEGDSEERVNVFDLAVKHIAERRAKGWKVLITGWSEGSLDRLLQVLNEHGLEKIKP 434

Query: 411  QSQNDFSLACQQTEKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVT 470
             +         + E    VL S E GF  G   +A+I E D+LGDR+++R +++ R    
Sbjct: 435  VTSLKEVKKLGKGEAACAVL-SLEAGFETGT--LAVIGEQDILGDRMVRRSKRRKR---- 487

Query: 471  NSDAVIRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSS 530
                 I  +A L  G  VVH +HGIGR++GLQT+EA G     + L Y ++AKL++PV +
Sbjct: 488  -GADFIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKLFLPVEN 546

Query: 531  LNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHL 590
            ++L+SRY   A EA  L KLGG AW   + K  +++ D+A EL+ + A R ++       
Sbjct: 547  IDLLSRYGSDAAEAT-LDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHAPALIA 605

Query: 591  DREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVA 650
                Y  F A FP++ET+DQ  AI AV  D+   + MDRL+CGDVGFGKTEVA+RAAF+A
Sbjct: 606  PDGLYDEFAARFPYDETEDQLNAIEAVRDDLGAGRPMDRLICGDVGFGKTEVALRAAFLA 665

Query: 651  TDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVD 710
              NG QVAV+VPTTLLA+QHF  F +RF  LPIRV+  SR   +KE     ++VA+GK D
Sbjct: 666  AMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVAEGKTD 725

Query: 711  ILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNM 770
            I+VGTH LL + I FA+LGLLI+DEE  FGV+ KE++K +++DV +LTL+ATPIPRTL +
Sbjct: 726  IVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQL 785

Query: 771  AMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKV 830
            AM+G+R+LS+I TPP  R+A++TF+   +  VIRE ++RE  RGGQ +++  ++  +  +
Sbjct: 786  AMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLADLADI 845

Query: 831  AADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIM 890
             A L+  VPE ++ VAHGQM   ELE +MN FY  ++++L+ TTI+E+G+DVPTANT+I+
Sbjct: 846  HAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTANTLIV 905

Query: 891  DRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTL 950
             RAD  GLAQL+QLRGRVGRS  +A+A    P  K +T  A +RL+ + SL+ LGAGF L
Sbjct: 906  HRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLGAGFQL 965

Query: 951  ATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVE 1010
            A+HDL+IRGAG LLGEEQSG I+ VGF LY +MLE+AV  +K G E   D     Q  + 
Sbjct: 966  ASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVK-GDEEVRDSGWSPQ--IS 1022

Query: 1011 MRLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAE 1070
            +    ++PE+Y+PD++ R+ +Y+++  +A   E+     E+IDRFG LP    +LL I  
Sbjct: 1023 VGTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKIVY 1082

Query: 1071 LKLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQ 1112
            +K       V K++A  +G  V+F      NP  LV  +  Q
Sbjct: 1083 IKSLCRTANVEKVDAGPKGVVVQFRNKEFPNPAALVGYIGKQ 1124