Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 681 a.a., ATP-dependent DNA helicase RecG from Acinetobacter radioresistens SK82

 Score =  240 bits (612), Expect = 3e-67
 Identities = 154/388 (39%), Positives = 219/388 (56%), Gaps = 23/388 (5%)

Query: 600 ATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAV 659
           A  PF  T  Q      ++ D+ Q + M RLV GDVG GKT VA  AA  A + G QVA+
Sbjct: 253 ANLPFNMTGAQRRVSKEIMIDLKQHQPMLRLVQGDVGAGKTLVAAVAACHALEAGWQVAL 312

Query: 660 LVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLL 719
           + PT +LA+QH+ NF+  F  L I+V  LS  +  K + Q    +  G   ++VGTH L 
Sbjct: 313 MAPTEILAEQHYLNFKRWFEPLGIQVAWLSGKQKGKARTQAEAIIRGGLAQLVVGTHALF 372

Query: 720 SSEIRFADLGLLIVDEEHRFGVRQKEKVK---AMRADVDILTLTATPIPRTLNMAMSGMR 776
              + FA LGL+I+DE+HRFGV Q+  ++   A +     L +TATPIPRTL M+  G  
Sbjct: 373 QENVEFARLGLVIIDEQHRFGVDQRLALRNKGAEQMTPHQLVMTATPIPRTLAMSAYGDL 432

Query: 777 DLSIIATPPARRLAIKTFVRQSEDSVIREAVLREI----MRGGQVYF---LHNQVETIDK 829
           D S+I   P  R  I+T     +    RE VL+ I      G Q Y+   L  Q ET+D 
Sbjct: 433 DTSVIDELPPGRTPIQTVTIPLDR---REEVLQRIATNCQEGKQAYWVCTLVEQSETLDA 489

Query: 830 VA-----ADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPT 884
            A     A++++  P   I + HG+M+  E + VM  F +    LL+ TT+IE G+DVP 
Sbjct: 490 QAAEATYAEIKERFPSLNIGLVHGKMKADEKQSVMQKFKNNELQLLIATTVIEVGVDVPN 549

Query: 885 ANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDL 944
           A+ ++++ A+ LGL+QLHQLRGRVGR    ++  LL   P  ++++  +RL  +    D 
Sbjct: 550 ASIMVIENAERLGLSQLHQLRGRVGRGAKASFCALLYKTP--LSQNGQERLSILRESND- 606

Query: 945 GAGFTLATHDLEIRGAGELLGEEQSGQI 972
             GF +A  DLE+RG GELLG +Q+G +
Sbjct: 607 --GFVIAEKDLELRGPGELLGTKQTGDM 632