Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1167 a.a., Transcription-repair-coupling factor from Acinetobacter radioresistens SK82

 Score = 1080 bits (2794), Expect = 0.0
 Identities = 557/1136 (49%), Positives = 782/1136 (68%), Gaps = 13/1136 (1%)

Query: 15   AGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPD 74
            AG+K+ +G+L G+S AL + E+A       +L   + Q   +L  E+E +    + +FPD
Sbjct: 30   AGEKRWVGSLLGSSAALLLKEIAEQSRQLLVLVAKNNQHVAQLESELEFYGIKPI-IFPD 88

Query: 75   WETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKR 134
            WE LPYD  SPHQDI+S+R++ L  +P   +GI ++  STL QR +P  ++L     ++ 
Sbjct: 89   WEILPYDRLSPHQDIVSERLAILSNMPQ--QGILLLSASTLAQRVAPTSWILGEHFDIRV 146

Query: 135  GDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTI 194
            G  F L++ +L+L  + Y  VD V+  GE+A RGSI+D++  G   P RID FDDEID++
Sbjct: 147  GQKFDLEQQKLRLVQAGYLLVDTVYDHGEFAVRGSIMDIYASGQEAPIRIDLFDDEIDSL 206

Query: 195  RTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFE-ARREPESVYSQVSKG 253
            + FDP+ QR+ + + + ++LPA EFP        FR+R+ + F  A  +   +Y  V +G
Sbjct: 207  KFFDPETQRTTSNLTQFKVLPAKEFPLKDGR-STFRDRYAESFPTANPKKNPIYQDVMEG 265

Query: 254  TWPAGIEYWQPLFFEHSET-----LFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRN 308
                GI+++ PLFF          L  YLP +S ++   +L++ +  F  DV+ RY+ R 
Sbjct: 266  IASPGIDFYLPLFFSKQSIQTQGMLSAYLPQHSIVITDRDLDECLITFWKDVNRRYEDRR 325

Query: 309  IDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQN 368
             +  +P+LPP +L+L+ + L       P++  +S   E +AG +N  V   P L V  ++
Sbjct: 326  HNADQPILPPEDLFLKPNALLELLNHFPRIIASSEQFEEKAGVINMAVSEPPRLPVNPKH 385

Query: 369  KEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSL 428
            ++P   ++++ +     ++   ES GRRE+L + L+       +  +F++      K ++
Sbjct: 386  EKPFHQVKEYIDNAQHPVLLVTESAGRRESLRDALRSTLGDIPTVANFNIFQNDQYKIAI 445

Query: 429  VLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPV 488
                 ERG I  D Q+ +I E+ L   RV+QRRRK+ ++   + + +IR+L EL  G PV
Sbjct: 446  TTAPLERGLIIND-QLTVISENQLYEHRVVQRRRKRQQE--VSEEFLIRSLTELSIGAPV 502

Query: 489  VHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLH 548
            VHIDHG+GRY GL TL       E++ L+Y   AK+YVPV++L+LISRYSGG  + A LH
Sbjct: 503  VHIDHGVGRYAGLVTLSIDDQEYEFLQLDYAEGAKVYVPVTNLHLISRYSGGDPDLAPLH 562

Query: 549  KLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETD 608
            K+G +AW KA+RKA E++ DVAAELL + A+R  KPGF F +D+  Y  F + F +EET 
Sbjct: 563  KIGSDAWNKAKRKALEQIHDVAAELLHIQARRHAKPGFAFEIDQSLYMQFASGFAYEETL 622

Query: 609  DQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQ 668
            DQA AI A L DM +A+ MDRLVCGDVGFGKTEVAMRAAFVA  N KQVAVLVPTTLLAQ
Sbjct: 623  DQANAIEATLYDMQKAEPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVLVPTTLLAQ 682

Query: 669  QHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADL 728
            QH+E+F+DRFA+ P+R+EVLSRF S K   + +QD+ADGKVDI++GTHKLL   ++F DL
Sbjct: 683  QHYESFKDRFADWPVRIEVLSRFGSNKAHVKNIQDLADGKVDIVIGTHKLLQENVQFKDL 742

Query: 729  GLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 788
            GL+IVDEEHRFGVR KE++KAMRADVD+LTLTATPIPRTLNMA SGMRDLSIIATPPARR
Sbjct: 743  GLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARR 802

Query: 789  LAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHG 848
            LA+KTFV++  D+ I+EA+LRE++RGGQVYFLHN+V++I++ A ++  LVPEAR+ VAHG
Sbjct: 803  LAVKTFVQEHTDASIKEAILRELLRGGQVYFLHNEVDSIERTAENIRALVPEARVAVAHG 862

Query: 849  QMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRV 908
            QMRERELE+VM  FYH+++N+LVC+TIIETGIDVP ANTII++RAD LGLAQLHQLRGRV
Sbjct: 863  QMRERELEQVMQQFYHKQYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQLHQLRGRV 922

Query: 909  GRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQ 968
            GRSHHQAYAYLL P  KA+  DA KRL+AI    +LGAGF LAT DLEIRGAGELLGE+Q
Sbjct: 923  GRSHHQAYAYLLVPSIKALKGDAEKRLDAIQRASNLGAGFMLATEDLEIRGAGELLGEQQ 982

Query: 969  SGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTR 1028
            SG +Q++G++LYMEMLE+A +A++ GK P  D  L    E+ + +PAL+P+EY+ D++ R
Sbjct: 983  SGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHMPALIPDEYLGDVHQR 1042

Query: 1029 LSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHER 1088
            L  YK+I++  ++D+L  +++EL+DRFG  P     L ++ +++L A +L + K++    
Sbjct: 1043 LLFYKRISNADTQDKLDNIRMELVDRFGLAPQPVKQLFSVHQIRLKAEQLGITKVDIGSH 1102

Query: 1089 GGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADML 1144
            GG +EF P+  +  + +++L+Q QP    M+G  +LK  + L E   RI+F+  +L
Sbjct: 1103 GGSIEFSPDTAVQAISIIQLMQKQPTHFRMEGGQRLKVLVMLEEYEQRIEFILKLL 1158